Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-109   GLY-110  0.6 0.4 11.2 13.6 44.1 47.7 119.5
 LEU-109   GLY-110  5.2 5.2 11.2 13.6 74.6 78.2 89.7
 GLY-110   ILE-111  2.7 2.6 -8.8 -1.9 31.0 28.8 90.5
 LEU-109   GLY-110  0.6 0.4 11.2 13.6 44.1 47.7 119.5
 LEU-109   GLY-110  5.2 5.2 11.2 13.6 74.6 78.2 89.7
 GLY-110   ILE-111  2.7 2.6 -8.8 -1.9 31.0 28.8 90.5
 ILE-111   SER-112  3.8 4.0 7.3 -1.6 117.2 118.3 -27.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-191   LEU-192  6.8 6.8 -0.3 2.3 74.6 74.3 29.4
 LEU-192   GLU-193  6.2 6.2 -12.2 1.4 50.5 49.6 57.0
 GLU-193   SER-194  5.5 5.4 3.5 6.8 64.5 65.3 26.8
 SER-194   THR-195  3.5 3.6 -4.9 10.2 110.7 111.1 25.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-215   ASP-216  9.1 9.3 -7.6 6.9 45.6 43.4 12.1
 ASP-216   SER-217  5.7 5.8 3.1 -5.0 66.0 66.2 15.0
 SER-217   LYS-218  2.1 2.3 2.5 -24.4 94.6 101.9 33.7
 LYS-218   GLY-219  2.2 1.9 17.1 3.5 57.0 44.5 88.3
 GLY-219   TYR-220  4.4 4.5 15.3 -1.2 71.6 72.6 6.7
 LEU-215   ASP-216  4.8 4.9 -7.6 6.9 153.3 160.4 -6.7
 ASP-216   SER-217  3.3 3.3 3.1 -5.0 83.4 83.3 -44.7
 SER-217   LYS-218  2.0 1.7 2.5 -24.4 74.9 67.3 -161.6
 LYS-218   GLY-219  5.7 5.4 17.1 3.5 92.6 105.9 3.8
 LEU-215   ASP-216  9.1 9.3 -7.6 6.9 45.6 43.4 12.1
 ASP-216   SER-217  5.7 5.8 3.1 -5.0 66.0 66.2 15.0
 SER-217   LYS-218  2.1 2.3 2.5 -24.4 94.6 101.9 33.7
 LYS-218   GLY-219  2.2 1.9 17.1 3.5 57.0 44.5 88.3
 GLY-219   TYR-220  4.4 4.5 15.3 -1.2 71.6 72.6 6.7
 LYS-210   VAL-211  3.1 2.9 -0.2 12.7 106.5 99.9 25.8
 VAL-211   GLY-212  5.6 5.7 2.7 -7.9 26.3 22.6 -31.2
 GLY-212   GLY-213  7.0 7.2 10.6 -8.3 42.6 45.8 31.8
 GLY-213   ASN-214  5.9 5.7 10.1 -8.6 80.8 81.3 -17.6
 ASN-214   LEU-215  2.6 2.5 -3.7 12.1 121.6 123.3 17.9
 LEU-215   ASP-216  4.8 4.9 -7.6 6.9 153.3 160.4 -6.7
 ASP-216   SER-217  3.3 3.3 3.1 -5.0 83.4 83.3 -44.7
 SER-217   LYS-218  2.0 1.7 2.5 -24.4 74.9 67.3 -161.6
 LYS-218   GLY-219  5.7 5.4 17.1 3.5 92.6 105.9 3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees