Pyrimidine Nucleoside Phosphorylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-65   GLY-66  15.7 15.4 -12.2 16.8 51.8 44.0 -32.8
 GLY-66   GLU-67  13.4 13.2 18.9 -34.5 136.7 132.7 51.4
 GLU-67   MET-68  10.8 10.4 -19.5 24.1 110.0 106.8 4.4
 MET-68   LEU-69  7.2 6.8 -1.2 -0.1 53.7 41.9 15.3
 LEU-69   ASP-70  4.7 4.5 16.1 -15.5 116.6 106.2 8.0
 ASP-70   LEU-71  2.2 1.5 -4.2 15.1 85.2 76.9 -6.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-150   ILE-151  13.3 13.1 2.1 0.7 80.9 84.3 4.8
 ILE-151   GLY-152  13.6 13.6 10.9 -38.7 128.4 132.9 82.5
 GLY-152   GLN-153  14.2 14.1 8.6 -6.0 74.4 63.3 -16.8
 GLN-153   THR-154  11.9 13.2 106.6 130.1 54.8 67.3 -404.8
 THR-154   GLY-155  13.5 16.0 -115.8 -93.7 84.3 160.0 573.5
 GLY-155   ASP-156  15.3 15.2 166.5 51.9 81.1 58.9 -239.4
 ASP-156   LEU-157  14.0 14.3 27.8 -19.9 110.8 117.8 -26.5
 LEU-157   THR-158  11.0 11.4 -14.4 2.1 31.9 24.0 68.9
 THR-158   PRO-159  12.1 12.1 -11.0 4.4 66.7 70.9 10.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-191   GLY-192  3.7 4.2 -24.7 5.1 48.3 44.2 74.6
 GLY-192   ALA-193  0.7 0.9 20.4 -16.1 82.3 83.7 0.7
 ALA-193   ASP-194  2.9 3.2 2.4 1.4 83.4 77.2 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-215   ARG-216  6.2 5.7 6.4 -0.4 58.2 61.9 14.4
 ARG-216   LEU-217  7.1 6.5 -5.7 -1.2 145.1 145.4 -25.2
 LEU-217   ALA-218  4.4 4.1 11.7 -2.4 40.9 40.5 38.2
 ALA-218   ARG-219  4.8 4.3 -2.2 2.3 115.3 117.8 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-220   MET-221  8.5 7.7 -5.9 -7.0 31.1 27.8 65.0
 MET-221   VAL-222  5.6 4.9 -0.9 0.8 52.6 53.1 13.6
 VAL-222   ASP-223  7.6 6.7 7.0 -12.0 116.0 117.7 17.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees