Putative Major Capsid Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-291   GLU-292  12.7 12.9 -12.9 14.4 100.5 96.7 -75.4
 GLU-292   GLY-293  11.9 12.1 0.2 -0.1 114.8 115.4 56.7
 GLY-293   ASN-294  14.9 15.1 -2.8 1.2 47.0 48.9 53.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-322   ALA-323  14.4 14.5 -9.9 9.4 55.6 53.5 9.1
 ALA-323   MET-324  14.2 14.3 4.2 -6.5 121.7 120.0 4.7
 MET-324   ASN-325  10.8 10.9 -7.4 7.6 53.5 54.2 47.2
 ASN-325   ASN-326  10.4 10.5 -11.5 11.9 95.0 97.5 -33.6
 ASN-326   VAL-327  7.6 7.5 -1.2 1.6 154.9 154.5 -32.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-332   VAL-333  7.2 7.4 -3.3 -0.4 109.8 110.9 -92.7
 VAL-333   MET-334  9.4 9.6 3.1 -6.6 60.3 60.6 -63.6
 MET-334   VAL-335  12.7 12.9 2.2 7.7 79.3 83.9 73.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-350   GLY-351  17.0 17.1 -4.6 4.0 70.8 72.3 63.2
 GLY-351   ILE-352  14.1 14.2 -0.4 0.8 92.0 91.7 -44.9
 ILE-352   ILE-353  11.3 11.6 -5.1 9.2 41.4 41.2 -54.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-357   LYS-358  10.2 10.4 2.8 -5.4 102.5 102.5 -120.7
 LYS-358   VAL-359  13.0 13.0 2.1 -2.7 159.8 160.0 -1.4
 VAL-359   ASP-360  12.5 12.6 -5.6 2.5 75.8 75.8 -72.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-365   PHE-366  9.9 9.8 -1.2 -8.6 65.3 65.6 115.7
 PHE-366   ARG-367  7.0 6.9 1.2 -1.3 141.0 135.9 20.2
 ARG-367   GLU-368  9.5 9.5 -8.2 21.1 30.1 26.3 -163.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-375   GLU-376  6.2 6.3 -1.1 4.3 72.5 69.6 -91.6
 GLU-376   LEU-377  5.5 5.6 -3.3 -0.2 24.9 22.0 85.2
 LEU-377   SER-378  3.1 3.2 0.3 -0.8 134.3 135.9 35.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-384   LYS-385  14.2 14.4 -1.4 6.3 46.3 41.2 -97.6
 LYS-385   ARG-386  15.3 15.2 4.8 -20.5 155.7 149.4 394.4
 ARG-386   PHE-387  15.1 14.9 4.7 -0.4 106.1 113.2 -21.8
 PHE-387   SER-388  12.3 12.4 2.2 11.9 106.9 110.9 -7.7
 SER-388   CYS-389  15.0 15.5 -18.9 0.6 138.6 131.9 -217.3
 CYS-389   PHE-390  16.1 16.3 4.6 -4.1 74.9 77.0 52.7
 PHE-390   SER-391  12.6 12.8 -4.7 15.3 52.3 52.9 -49.0
 SER-391   GLY-392  12.3 12.2 -10.6 6.2 87.2 89.6 50.9
 GLY-392   ALA-393  15.8 15.7 0.5 -10.2 164.9 164.5 122.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-410   PHE-411  29.1 29.0 4.5 -2.8 159.5 156.5 -7.3
 PHE-411   LYS-412  28.6 28.4 6.1 0.7 130.4 127.1 -71.9
 LYS-412   GLU-413  31.1 30.7 -11.2 18.2 89.7 95.9 -83.1
 GLU-413   ALA-414  29.6 29.1 -13.3 -2.2 78.5 71.6 73.9
 ALA-414   ILE-415  25.9 25.5 -8.8 -3.9 24.5 16.9 263.8
 ILE-415   PHE-416  24.2 24.0 -5.4 6.4 86.1 84.1 -95.8
 PHE-416   GLY-417  20.8 20.7 1.4 -3.5 136.2 140.8 38.1
 GLY-417   ALA-418  18.3 18.3 -0.5 2.4 33.1 35.7 -147.2
 ALA-418   GLY-419  18.9 19.0 -9.0 20.6 75.5 76.5 5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-421   ILE-422  10.6 10.7 -6.4 3.5 99.7 96.4 -40.9
 ILE-422   PHE-423  6.8 7.0 -3.5 3.3 26.9 25.5 21.6
 PHE-423   PHE-424  4.9 5.2 3.1 -0.3 77.8 75.9 -4.0
 PHE-424   ARG-425  1.2 1.4 -2.4 6.2 27.3 29.2 -73.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-438   ASN-439  5.3 5.4 1.9 -6.6 163.1 164.3 43.2
 ASN-439   ALA-440  5.1 4.9 17.5 -18.4 110.3 112.1 5.6
 ALA-440   ASN-441  8.3 8.1 4.9 -4.2 120.6 120.2 -61.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-444   ASN-445  12.5 12.6 -6.3 4.1 76.6 77.2 -48.1
 ASN-445   MET-446  14.0 14.2 -12.9 15.1 25.5 25.5 -42.9
 MET-446   GLN-447  12.3 12.3 -1.8 -4.0 64.7 63.3 53.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-461   ALA-462  28.2 28.3 -5.9 6.8 27.8 21.8 41.4
 ALA-462   HIS-463  27.4 27.5 1.7 3.5 124.0 119.6 -12.9
 HIS-463   TYR-464  25.7 25.9 -3.9 1.4 82.3 81.3 99.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-495   LEU-496  15.1 15.0 0.6 -2.9 141.6 136.4 -27.8
 LEU-496   LEU-497  13.4 13.0 3.2 -9.6 133.9 139.1 153.1
 LEU-497   ARG-498  16.3 15.7 -6.1 14.2 101.9 103.9 25.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees