Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.4 6.4 25.4 -14.5 114.0 118.6 -21.1
 LEU-108   GLY-109  4.1 3.0 -10.5 25.2 134.6 135.1 26.4
 GLY-109   ILE-110  2.5 1.9 -43.7 25.5 59.7 65.8 24.5
 ILE-110   SER-111  4.7 4.3 -3.6 -4.0 57.4 64.0 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-210   ILE-211  7.8 6.9 -4.6 20.3 25.6 26.6 -38.4
 ILE-211   ASP-212  7.2 7.4 178.5 153.6 113.1 136.4 18.5
 ASP-212   SER-213  4.4 4.3 136.5 -100.3 74.6 63.1 62.0
 SER-213   LYS-214  4.6 3.2 -1.1 11.0 75.7 69.1 4.4
 LYS-214   GLY-215  3.7 3.3 18.8 -8.0 42.6 42.4 21.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-250   TRP-251  8.5 8.7 -3.4 -0.4 94.7 90.3 -9.5
 TRP-251   ARG-252  5.1 5.4 9.3 91.5 149.1 153.4 -243.0
 ARG-252   GLY-253  5.3 6.1 -55.3 11.3 53.6 91.3 50.8
 GLY-253   ASN-254  2.4 5.7 -156.8 -0.8 26.3 23.9 416.9
 ASN-254   GLY-255  3.0 5.1 -69.4 -166.9 69.7 74.5 -179.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees