Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-496   SER-497  6.4 6.6 -4.1 9.0 55.6 56.7 -9.9
 SER-497   LEU-498  3.3 3.7 7.3 -0.5 49.8 53.0 27.0
 LEU-498   GLY-499  0.3 0.6 1.6 -26.5 124.1 126.5 88.0
 GLY-499   ILE-500  4.0 3.8 0.1 0.7 48.9 52.8 -8.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-727   ASP-728  9.6 9.6 6.8 -5.6 32.7 35.2 11.7
 ASP-728   SER-729  6.6 6.5 -0.4 -0.9 74.0 75.1 7.0
 SER-729   LYS-730  3.2 2.9 14.6 7.6 68.4 77.2 47.2
 LYS-730   GLY-731  1.5 1.5 -9.9 -17.8 57.8 65.6 58.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees