Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-247   ALA-248  4.5 4.2 -11.5 4.5 37.4 38.5 146.2
 ALA-248   ALA-249  6.6 6.6 6.1 4.1 140.0 139.6 -180.0
 ALA-249   LEU-250  3.8 3.7 -7.1 10.8 97.8 93.1 62.0
 LEU-250   PHE-251  4.0 4.0 -7.5 9.0 70.5 68.1 -43.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-289   ILE-290  2.3 2.2 9.8 -0.5 68.6 71.9 101.5
 ILE-290   ALA-291  5.6 5.5 7.3 -4.8 10.4 4.5 28.2
 ALA-291   CYS-292  6.7 6.8 0.8 -5.4 77.5 73.4 -36.5
 CYS-292   GLY-293  9.8 9.9 8.1 2.9 74.5 74.8 14.9
 GLY-293   PRO-294  12.8 13.0 0.4 -7.2 32.8 23.2 -38.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-436   GLU-437  3.0 3.0 -2.5 1.2 34.2 36.8 36.2
 GLU-437   VAL-438  5.7 5.8 1.8 -3.1 129.1 133.1 -55.5
 VAL-438   THR-439  4.4 4.6 0.3 -10.3 143.5 145.6 120.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-462   LYS-463  13.0 13.2 29.3 -15.9 95.6 104.0 -27.3
 LYS-463   ALA-464  9.7 9.7 2.1 7.8 66.3 68.3 115.1
 ALA-464   VAL-465  9.0 8.9 -2.5 6.7 45.8 47.4 -132.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees