DNA Polymerase I
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-676
ARG-677
9.3
9.8
11.3
-7.0
39.4
37.8
5.1
ARG-677
ASP-678
6.2
6.6
-1.7
5.6
79.0
86.4
4.7
ASP-678
LEU-679
5.1
5.4
16.5
-27.3
91.8
99.5
13.9
LEU-679
ASP-680
1.5
2.0
-0.4
-33.0
42.6
39.9
59.9
ASP-680
ILE-681
1.8
2.5
-16.2
1.6
44.2
49.5
27.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-711
ILE-712
1.9
2.3
-3.0
-10.4
87.0
90.4
-0.1
ILE-712
VAL-713
3.5
3.7
-4.4
-3.0
105.4
97.1
-18.6
VAL-713
TYR-714
3.6
3.9
13.2
-22.2
15.8
29.4
-22.1
TYR-714
GLY-715
2.6
3.0
47.7
2.6
49.7
33.3
101.2
GLY-715
ILE-716
3.9
3.7
-121.4
30.9
93.2
92.3
-5.3
ILE-716
SER-717
4.8
4.2
-4.9
53.1
145.1
104.6
62.5
SER-717
ASP-718
6.7
7.7
32.0
4.8
102.8
120.0
-28.2
ASP-718
TYR-719
9.9
10.9
4.7
-1.7
60.6
67.7
2.8
TYR-719
GLY-720
9.4
11.4
0.6
1.5
112.8
105.9
0.0
GLY-720
LEU-721
6.5
8.6
-3.6
6.2
28.6
19.2
-2.2
LEU-721
ALA-722
8.0
9.2
-19.0
18.2
95.1
86.2
8.9
ALA-722
GLN-723
11.5
13.0
7.6
-13.1
76.6
79.3
3.8
GLN-723
ASN-724
11.2
13.4
3.5
14.2
138.2
133.0
-27.1
ASN-724
LEU-725
10.0
11.6
-36.5
21.0
42.4
39.1
28.8
LEU-725
ASN-726
12.1
13.1
14.0
-8.3
68.0
76.6
-4.7
ASN-726
ILE-727
14.9
16.2
4.4
9.1
103.4
110.1
-13.6
ILE-727
SER-728
15.9
16.8
9.7
-2.0
39.7
38.3
14.7
SER-728
ARG-729
16.6
18.0
9.5
-20.6
93.9
77.3
-3.8
ARG-729
LYS-730
14.6
16.0
15.1
-16.3
131.0
121.8
1.1
LYS-730
GLU-731
17.2
18.1
6.6
-2.9
162.0
158.9
-6.9
GLU-731
ALA-732
16.3
16.9
-9.6
11.3
79.7
91.2
-0.1
ALA-732
ALA-733
12.6
13.2
-1.8
1.5
86.3
97.4
1.6
ALA-733
GLU-734
13.4
14.0
-2.4
-10.0
27.3
36.0
23.8
GLU-734
PHE-735
15.4
15.5
8.0
-4.9
135.0
133.1
-0.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees