DNA Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-473
GLU-474
9.9
11.1
12.0
0.9
51.2
56.2
14.4
GLU-474
ILE-475
8.5
9.3
-17.0
13.2
94.0
81.9
4.4
ILE-475
THR-476
5.9
6.4
-11.6
9.9
37.9
28.0
2.8
THR-476
LYS-477
4.8
6.3
-5.2
-4.3
95.1
91.3
2.5
LYS-477
VAL-478
5.2
7.1
19.3
-10.7
62.1
65.6
6.2
VAL-478
PHE-479
2.8
4.2
-3.4
6.5
59.0
51.4
-8.1
PHE-479
ASN-480
0.3
1.7
-9.5
2.2
47.2
52.5
16.4
ASN-480
GLN-481
2.5
4.1
-13.2
11.2
116.4
117.1
6.2
GLN-481
ARG-482
5.0
6.3
20.8
-26.0
83.2
86.2
3.0
ARG-482
LYS-483
4.9
5.0
-6.6
-19.4
32.0
21.2
60.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-562
ILE-563
2.1
0.4
-0.1
19.4
122.8
122.8
22.1
ILE-563
ASN-564
4.0
2.6
-15.8
-6.8
78.8
62.1
3.7
ASN-564
SER-565
7.2
5.4
23.2
-32.4
149.0
154.7
6.5
SER-565
LEU-566
6.6
4.8
5.1
18.6
83.1
88.6
26.4
LEU-566
TYR-567
7.7
6.5
-14.3
6.1
99.3
78.4
15.3
TYR-567
GLY-568
10.6
9.8
4.4
2.5
153.4
166.5
-14.6
GLY-568
ALA-569
11.2
9.5
1.2
-14.9
123.2
118.3
18.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees