Ribosomal Protein L1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-65   HIS-66  10.2 8.8 63.2 1.3 48.1 64.0 47.2
 HIS-66   GLY-67  11.6 10.4 -7.3 -119.6 120.3 142.6 -109.7
 GLY-67   LEU-68  11.0 10.5 171.2 -57.7 54.6 89.5 47.1
 LEU-68   GLY-69  7.6 8.9 6.7 74.9 53.0 17.9 95.3
 GLY-69   LYS-70  6.7 8.0 171.4 -95.0 20.1 93.7 63.1
 LYS-70   GLN-71  8.3 9.0 -126.4 136.4 104.9 46.3 -5.4
 GLN-71   VAL-72  10.8 9.3 -165.0 68.7 95.3 107.9 -20.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-152   ILE-153  5.5 5.0 -17.4 -8.0 76.9 70.4 11.9
 ILE-153   ARG-154  2.4 2.1 20.8 14.3 69.8 89.5 12.5
 ARG-154   GLU-155  2.8 3.6 -32.1 11.8 166.7 146.4 -28.5
 GLU-155   ILE-156  2.3 3.1 2.0 21.7 77.6 92.0 2.4
 ILE-156   LYS-157  1.5 1.3 3.4 -40.3 109.1 109.3 13.4
 LYS-157   ALA-158  3.4 4.3 10.6 -4.1 52.7 71.3 -3.7
 ALA-158   GLY-159  4.7 6.5 -22.7 95.1 146.8 160.5 79.5
 GLY-159   ARG-160  4.4 5.9 34.0 16.9 36.7 60.0 39.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees