Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-405   HIS-406  18.0 17.0 -3.1 15.4 67.7 45.8 -8.1  HIS-406   LEU-407  15.8 16.1 -71.9 18.7 83.3 75.0 6.1  LEU-407   THR-408  12.1 12.6 47.1 -54.9 152.0 165.2 5.3  THR-408   ARG-409  10.5 10.8 -41.1 78.1 77.7 89.6 -6.4  ARG-413   LYS-414  3.2 2.5 -57.8 19.5 57.3 54.6 18.5  LYS-414   SER-415  3.6 4.0 -2.2 8.0 78.3 84.5 2.2 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees