Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  0.9 0.9 10.8 11.2 75.8 78.9 30.6
 GLY-110   ILE-111  3.2 3.4 -8.2 -1.8 30.5 30.6 39.6
 ILE-111   SER-112  6.2 6.2 8.0 -5.6 121.9 126.6 -4.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-195   MET-196  3.3 3.4 4.1 0.8 26.1 29.4 26.1
 MET-196   ASN-197  4.5 4.9 2.7 0.3 45.2 43.1 19.4
 ASN-197   GLU-198  1.3 1.7 13.5 -1.9 72.0 72.1 40.8
 GLU-198   TYR-199  3.0 3.1 -4.6 -0.8 117.2 123.3 -16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-203   LYS-204  6.6 6.9 -0.4 6.5 25.8 29.1 -48.9
 LYS-204   PRO-205  6.2 6.3 3.4 -14.5 94.4 94.7 20.9
 PRO-205   CYS-206  3.7 4.0 25.1 -12.3 67.0 63.7 27.3
 CYS-206   ASP-207  3.5 3.5 4.9 -1.6 101.1 103.1 -16.7
 ASP-207   THR-208  2.0 1.4 1.4 -3.8 37.4 39.8 -4.9
 THR-208   MET-209  2.4 2.0 1.0 -5.8 53.4 49.0 -9.2
 MET-209   LYS-210  4.7 4.1 24.8 -15.0 28.1 35.3 38.0
 LYS-210   VAL-211  4.9 5.0 -0.2 15.6 101.8 97.3 23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-212   GLY-213  10.3 10.6 8.5 -6.8 140.4 133.7 -16.1
 GLY-213   ASN-214  9.2 9.0 14.0 -12.0 103.5 103.2 -2.3
 ASN-214   LEU-215  6.6 6.8 7.0 4.9 121.0 125.1 -33.9
 LEU-215   ASP-216  8.9 9.2 4.1 -3.2 158.1 163.5 -3.6
 ASP-216   SER-217  6.9 7.1 -5.4 -3.1 82.5 84.5 17.1
 SER-217   LYS-218  3.5 3.8 -8.9 -11.9 70.1 55.7 78.3
 LYS-218   GLY-219  3.1 2.9 10.6 10.4 88.0 75.5 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees