3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-195   PHE-196  7.6 6.8 -13.2 8.3 138.1 131.9 -6.6
 PHE-196   ALA-197  5.4 5.1 -16.0 7.0 146.1 143.9 -14.8
 ALA-197   LYS-198  7.8 7.1 -8.3 2.3 91.1 80.5 -4.4
 LYS-198   ALA-199  10.3 10.3 -0.8 -6.0 106.1 82.4 -11.5
 ALA-199   LEU-200  8.8 9.7 -8.0 30.0 166.9 141.5 66.8
 LEU-200   GLU-201  7.9 8.8 8.0 45.3 50.7 37.6 117.1
 GLU-201   SER-202  10.0 10.9 1.0 4.4 94.6 79.1 6.3
 SER-202   PRO-203  13.5 14.1 -2.0 22.2 28.4 35.8 -59.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-211   GLY-212  15.1 15.2 -11.2 -5.3 118.6 119.7 -26.5
 GLY-212   GLY-213  16.5 16.8 9.5 -22.5 103.9 90.9 -20.1
 GLY-213   ALA-214  17.1 16.9 16.8 -21.6 97.8 110.4 -20.0
 ALA-214   LYS-215  20.4 19.2 43.1 -1.3 164.0 146.8 -111.6
 LYS-215   VAL-216  20.4 17.9 -84.9 28.8 50.9 37.3 115.7
 VAL-216   ALA-217  20.0 19.8 5.2 -9.9 140.2 158.8 -5.0
 ALA-217   ASP-218  19.7 20.3 3.9 0.6 89.3 113.1 -7.9
 ASP-218   LYS-219  16.7 16.7 -45.7 27.5 96.1 85.2 46.1
 LYS-219   ILE-220  14.8 15.1 -35.0 2.5 36.2 59.7 94.2
 ILE-220   GLN-221  15.5 17.7 18.4 -8.1 112.5 156.2 -12.1
 GLN-221   LEU-222  11.9 15.9 27.0 -31.3 51.8 93.5 -5.6
 LEU-222   ILE-223  10.9 12.7 35.6 -2.2 95.7 95.6 -13.9
 ILE-223   ASN-224  14.0 14.9 0.1 5.5 151.1 151.6 -22.5
 ASN-224   ASN-225  13.3 15.0 2.3 -13.1 90.7 97.1 -12.9
 ASN-225   MET-226  10.1 11.4 7.6 7.2 54.2 42.4 17.6
 MET-226   LEU-227  11.7 11.9 -2.5 4.7 67.4 78.1 0.0
 LEU-227   ASP-228  14.9 15.2 -0.2 2.2 49.1 53.0 -7.9
 ASP-228   LYS-229  13.1 13.6 0.5 16.5 61.0 57.0 45.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-391   SER-392  3.2 3.0 1.3 -29.5 119.9 122.8 56.4
 SER-392   THR-393  0.9 1.4 6.7 15.8 63.5 77.1 20.0
 THR-393   GLY-394  3.2 4.2 -7.3 16.9 50.8 37.8 -11.3
 GLY-394   GLY-395  5.0 5.0 29.8 -43.1 107.7 91.5 -2.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees