Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  PRO-532   PHE-533  6.2 6.2 -0.6 1.6 58.5 48.2 -64.2  PHE-533   MET-534  7.9 7.8 3.5 -10.1 151.7 149.5 19.0  MET-534   THR-535  6.3 6.2 3.6 3.0 72.1 74.2 19.0  THR-535   LEU-536  6.9 6.5 6.1 -5.6 146.2 139.2 -12.0  LEU-536   GLY-537  6.6 6.0 -10.6 19.5 107.1 107.7 13.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ILE-759   ASP-760  14.2 14.0 -8.1 -1.0 13.4 14.9 85.4  ASP-760   SER-761  12.6 12.4 -20.9 -6.0 84.2 96.5 -1.0  SER-761   LYS-762  10.5 10.0 46.3 -55.9 117.8 139.1 39.5  LYS-762   GLY-763  6.7 6.8 12.7 31.1 85.1 70.0 -23.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  TRP-798   TRP-799  9.2 9.2 -13.1 27.3 60.6 62.8 -36.0  TRP-799   ARG-800  6.7 6.6 -4.5 89.4 34.0 35.5 -614.0  ARG-800   GLY-801  7.7 8.5 -169.8 54.3 41.0 42.9 810.5  GLY-801   ASN-802  6.6 5.7 -99.6 1.0 58.0 101.4 103.8  ASN-802   GLY-803  7.1 6.6 -61.4 117.7 56.3 21.6 -262.3 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees