Oligopeptide-Binding Protein Oppa

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-297   GLN-298  4.6 5.3 -10.4 -9.8 104.2 107.3 9.3
 GLN-298   ALA-299  3.1 4.0 11.4 -5.9 69.7 61.5 15.7
 ALA-299   MET-300  0.7 0.8 22.4 7.2 18.7 20.7 64.1
 MET-300   TYR-301  1.9 1.6 -3.0 -9.5 83.3 84.6 1.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-541   MET-542  7.9 8.0 11.7 15.2 28.9 28.6 49.6
 MET-542   LEU-543  5.0 5.2 5.5 -17.0 94.6 85.2 26.7
 LEU-543   ASN-544  2.3 3.1 -4.8 -3.1 116.4 113.4 -5.0
 ASN-544   TYR-545  1.4 1.1 -11.8 21.0 133.6 129.6 37.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees