Serum Transferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-84   TYR-85  4.3 4.6 9.8 -15.0 71.5 67.7 -2.4
 TYR-85   GLY-86  2.4 2.2 -5.3 -7.8 131.2 125.8 -10.1
 GLY-86   SER-87  2.6 1.9 -1.2 5.4 164.8 161.4 4.1
 SER-87   LYS-88  1.5 0.6 -9.7 2.6 100.0 88.0 19.6
 LYS-88   GLU-89  2.2 4.0 16.8 -16.9 73.8 78.9 -7.1
 GLU-89   ASP-90  2.9 5.4 -23.9 23.7 40.4 24.3 -8.3
 ASP-90   PRO-91  4.3 5.5 -1.7 -26.3 35.9 52.2 40.1
 PRO-91   GLN-92  3.1 3.3 8.6 8.3 153.8 163.9 -27.8
 GLN-92   THR-93  2.7 2.8 12.0 -20.8 132.3 116.9 6.7
 THR-93   PHE-94  4.0 3.9 -55.8 40.1 24.8 17.8 29.5
 PHE-94   TYR-95  1.9 3.2 -6.1 17.8 99.9 92.1 5.0
 TYR-95   TYR-96  2.5 3.0 -11.2 -16.1 39.7 42.3 43.2
 TYR-96   ALA-97  5.6 5.9 -3.6 2.0 52.3 46.4 -2.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-242   LEU-243  11.2 11.1 3.0 1.7 30.4 26.0 -1.1
 LEU-243   ALA-244  9.3 9.2 6.8 6.3 95.1 96.8 -6.7
 ALA-244   GLN-245  6.7 6.9 -25.8 6.9 31.3 15.0 31.4
 GLN-245   VAL-246  4.9 6.5 -30.2 22.9 114.3 96.8 -8.6
 VAL-246   PRO-247  1.7 3.4 -33.9 -3.1 41.9 35.1 44.3
 PRO-247   SER-248  3.5 4.4 -21.6 5.2 70.3 92.6 1.2
 SER-248   HIS-249  4.3 3.8 143.1 -82.8 62.5 83.1 26.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-325   LEU-326  4.9 4.8 -43.2 28.8 77.2 70.6 16.1
 LEU-326   ARG-327  1.4 1.8 8.3 -16.4 134.0 115.4 -0.4
 ARG-327   GLU-328  4.4 5.4 11.0 -0.9 158.8 152.0 4.2
 GLU-328   GLY-329  4.9 6.4 54.7 -4.7 90.9 130.4 -26.4
 GLY-329   THR-330  4.4 3.9 -128.4 60.9 36.5 60.5 96.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees