Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-121   GLY-122  14.5 12.9 -28.5 31.1 149.8 137.2 -0.1
 GLY-122   ARG-123  15.0 14.8 10.1 18.0 38.6 24.1 43.4
 ARG-123   ARG-124  13.2 13.5 7.7 13.0 67.4 56.4 22.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-157   ASP-158  20.0 18.0 63.8 7.0 36.1 35.5 158.9
 ASP-158   ASP-159  17.1 18.0 79.1 29.5 85.7 53.0 139.9
 ASP-159   GLN-160  15.4 16.0 50.4 -3.2 55.2 52.4 105.1
 GLN-160   GLU-161  16.3 13.9 -94.3 -29.2 135.3 105.3 -145.9
 GLU-161   GLU-162  14.3 11.2 42.0 -23.0 51.1 35.8 31.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees