Orphan Nuclear Receptor Nr5a2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-408   HIS-409  7.3 7.2 -1.8 0.1 127.2 126.1 -15.3
 HIS-409   ILE-410  8.1 7.8 1.6 -6.5 42.7 43.0 -66.6
 ILE-410   TYR-411  5.0 4.8 6.0 -0.7 38.9 38.7 73.4
 TYR-411   ARG-412  4.8 4.6 -0.3 2.8 126.8 126.6 13.8
 ARG-412   GLN-413  8.2 8.0 -6.3 7.6 127.7 128.6 3.9
 GLN-413   VAL-414  7.5 7.4 -0.4 -0.4 137.2 140.4 -1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-455   ARG-456  6.9 7.2 5.2 -2.1 92.3 93.9 -5.2
 ARG-456   LEU-457  6.6 6.6 -3.5 2.3 75.9 73.1 16.1
 LEU-457   ARG-458  3.1 3.0 -3.8 -0.8 17.1 17.2 51.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees