DNA Mismatch Repair Protein Muts

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-436   ARG-437  14.3 13.2 -6.6 6.3 80.5 84.5 -6.1
 ARG-437   ALA-438  12.4 11.8 -9.3 -20.6 125.2 131.8 -135.6
 ALA-438   LEU-439  10.2 9.9 24.6 -12.0 119.9 106.8 -35.7
 LEU-439   ALA-440  8.2 8.6 -15.3 16.6 48.3 44.4 -11.8
 ALA-440   ASP-441  8.2 7.3 -27.3 49.2 115.2 109.9 102.4
 ASP-441   GLY-442  7.5 6.2 -49.6 25.1 127.1 119.0 -94.5
 GLY-442   ALA-443  4.2 3.8 -23.1 -21.0 58.2 51.1 206.5
 ALA-443   THR-444  2.6 2.9 -17.9 -5.4 114.2 69.9 -14.2
 THR-444   ASP-445  4.5 2.4 14.3 22.7 67.4 51.1 122.9
 ASP-445   TYR-446  2.6 2.7 14.4 -14.4 114.8 85.0 -1.3
 TYR-446   LEU-447  2.0 2.1 6.9 7.8 130.4 137.3 -39.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-452   ARG-453  11.6 11.7 23.5 -20.1 100.7 108.7 -26.9
 ARG-453   GLU-454  12.1 12.1 -6.0 21.8 135.1 134.1 41.2
 GLU-454   ARG-455  13.6 13.6 0.1 -0.9 76.0 85.8 -31.7
 ARG-455   GLU-456  15.4 15.5 -6.1 8.7 48.9 50.6 -16.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-462   LEU-463  17.8 17.9 13.4 -18.0 92.2 88.7 13.9
 LEU-463   LYS-464  14.9 14.9 -5.7 -0.4 77.2 72.6 18.9
 LYS-464   VAL-465  11.5 11.7 10.3 0.7 76.1 70.2 31.8
 VAL-465   GLY-466  7.8 7.9 1.7 12.3 63.8 60.1 23.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-473   TYR-474  3.9 3.1 11.9 -12.9 100.0 107.7 20.5
 TYR-474   ILE-475  7.1 6.7 3.4 -1.8 48.2 55.8 27.6
 ILE-475   GLN-476  10.1 9.8 5.6 1.1 135.6 134.4 -31.7
 GLN-476   ILE-477  12.0 12.1 11.1 -9.4 69.0 66.6 -0.2
 ILE-477   SER-478  15.8 15.9 5.6 -12.0 143.9 142.7 33.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees