Prolyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-288   GLN-289  7.6 7.8 -11.0 16.7 84.7 83.3 10.4
 GLN-289   VAL-290  4.1 4.4 -8.3 0.8 49.2 51.9 33.7
 VAL-290   VAL-291  4.7 4.7 -9.0 10.1 85.2 81.2 24.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-342   GLY-343  9.4 9.3 -2.2 -2.5 99.0 100.8 6.6
 GLY-343   VAL-344  6.0 6.1 1.2 6.0 35.1 37.5 58.9
 VAL-344   PRO-345  5.3 5.4 -0.2 4.5 107.7 110.0 5.9
 PRO-345   PHE-346  2.6 2.4 -9.7 3.6 34.8 35.3 61.8
 PRO-345   PHE-346  2.6 2.4 -9.7 3.6 34.8 35.3 61.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-345   PHE-346  2.6 2.4 -9.7 3.6 34.8 35.3 61.8
 PRO-345   PHE-346  2.6 2.4 -9.7 3.6 34.8 35.3 61.8
 PHE-346   ARG-347  4.0 3.8 -13.7 12.5 67.6 68.7 19.1
 ARG-347   VAL-348  7.0 7.1 5.3 -7.0 162.3 162.6 1.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-379   ALA-380  5.9 6.0 15.0 -20.6 134.7 133.8 65.4
 ALA-380   LEU-381  5.5 5.4 -0.7 -0.4 20.7 21.4 4.4
 LEU-381   PRO-382  3.4 3.2 17.0 -13.6 130.8 128.5 -34.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees