3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-201   LYS-202  2.2 2.7 26.0 -8.1 96.1 93.0 -11.6
 LYS-202   VAL-203  2.7 1.2 -13.2 14.4 116.4 102.2 7.7
 VAL-203   LEU-204  2.5 3.0 11.7 -17.3 107.9 133.1 11.9
 LEU-204   GLY-205  3.7 4.5 12.9 -18.1 154.3 152.0 22.5
 GLY-205   ASN-206  3.8 3.2 -43.3 -21.8 92.8 89.5 -23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-215   GLY-216  12.5 12.8 1.6 8.4 146.9 150.2 -31.6
 GLY-216   GLY-217  13.6 13.7 2.3 18.4 98.6 91.3 -17.9
 GLY-217   ALA-218  14.0 14.9 -29.5 38.0 89.2 68.8 -10.0
 ALA-218   LYS-219  17.4 18.5 121.4 164.9 23.7 55.4 -226.5
 LYS-219   VAL-220  19.4 20.7 107.6 -21.7 56.0 31.3 297.4
 VAL-220   SER-221  20.6 20.9 16.2 -1.9 32.7 42.7 29.2
 SER-221   ASP-222  23.3 22.5 0.9 15.0 35.2 74.0 40.6
 ASP-222   LYS-223  20.9 19.5 32.3 -47.9 77.6 58.2 -13.6
 LYS-223   ILE-224  17.8 17.2 36.6 5.7 69.5 33.3 94.5
 ILE-224   GLN-225  20.1 19.5 -13.5 9.7 171.2 146.9 -13.4
 GLN-225   LEU-226  20.7 17.6 -21.1 27.4 123.4 89.5 19.2
 LEU-226   LEU-227  17.1 14.4 -30.5 2.8 95.4 109.0 -10.8
 LEU-227   ASP-228  17.3 16.3 -0.1 3.3 147.3 168.4 22.6
 ASP-228   ASN-229  19.5 17.5 1.5 -6.7 44.0 57.5 -15.2
 ASN-229   MET-230  16.7 13.9 -45.1 33.9 79.3 77.4 -30.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-231   GLN-232  16.6 15.9 -10.3 -8.4 41.6 43.8 48.2
 GLN-232   ARG-233  15.5 15.2 24.7 -23.5 80.7 89.5 -3.3
 ARG-233   ILE-234  12.2 12.0 30.8 -24.9 42.5 41.2 15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-393   VAL-394  3.3 3.6 -8.1 2.8 50.9 50.6 13.2
 VAL-394   SER-395  3.6 3.4 5.1 11.4 63.6 72.9 44.0
 SER-395   THR-396  5.9 6.0 2.6 -13.5 123.3 136.7 29.5
 THR-396   GLY-397  9.4 9.4 -2.3 -20.3 108.5 98.7 -0.6
 GLY-397   GLY-398  9.8 11.0 -23.3 37.3 70.3 96.0 -20.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees