Vitamin D-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-131   GLU-132  4.1 4.8 -0.3 1.2 59.8 51.9 -8.3
 GLU-132   PHE-133  5.5 5.3 5.8 2.5 55.3 62.3 37.4
 PHE-133   PRO-134  5.8 5.5 7.3 -3.6 53.4 56.2 9.8
 PRO-134   THR-135  3.1 2.9 3.3 -14.0 42.8 46.8 -77.7
 THR-135   TYR-136  4.4 4.4 20.0 -5.2 73.5 73.1 37.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-211   LEU-212  11.2 10.9 -0.2 -2.8 63.8 58.4 1.1
 LEU-212   THR-213  10.2 9.8 4.7 -0.8 50.7 55.1 11.6
 THR-213   THR-214  9.0 8.6 7.3 -11.6 76.0 74.7 28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees