Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-534   THR-535  6.9 7.1 -7.6 0.4 26.4 28.2 29.9
 THR-535   LEU-536  5.0 5.3 0.1 8.1 78.9 73.9 4.3
 LEU-536   GLY-537  1.5 2.0 -15.2 -4.4 32.4 33.3 51.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-759   ASP-760  6.6 7.0 -14.9 19.7 120.8 124.6 11.4
 ASP-760   SER-761  2.9 3.3 -11.3 2.7 52.9 53.2 25.5
 SER-761   LYS-762  1.2 1.9 7.1 -0.9 91.9 91.2 -3.5
 LYS-762   GLY-763  3.5 3.1 -2.8 -13.5 32.1 39.3 44.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees