Glycine Betaine/carnitine/choline-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-104   GLU-105  7.8 7.7 21.9 1.2 72.2 73.3 72.7
 GLU-105   LYS-106  4.8 4.6 8.6 -10.4 142.9 144.0 11.4
 LYS-106   ASP-107  5.9 5.7 13.2 -15.3 95.5 99.7 6.0
 ASP-107   PRO-108  5.0 4.8 2.5 14.4 63.4 63.7 16.6
 ASP-107   PRO-108  5.0 4.8 2.5 14.4 63.4 63.7 16.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-107   PRO-108  5.0 4.8 2.5 14.4 63.4 63.7 16.6
 ASP-107   PRO-108  5.0 4.8 2.5 14.4 63.4 63.7 16.6
 PRO-108   LYS-109  3.4 3.3 -14.1 5.9 59.7 53.6 33.0
 LYS-109   LYS-110  5.2 5.1 -2.4 1.5 40.5 44.1 -11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-133   ASP-134  5.5 5.8 -3.0 -11.3 120.5 119.6 -5.3
 ASP-134   ASN-135  2.1 2.2 12.0 -18.1 141.6 140.2 47.1
 ASN-135   THR-136  1.0 0.8 -5.7 15.0 119.8 112.0 40.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-239   PRO-240  6.0 6.0 -1.9 16.3 127.2 130.0 85.3
 PRO-240   TYR-241  2.7 2.6 -9.7 2.8 113.6 118.0 -43.0
 TYR-241   ASP-242  1.6 1.8 8.6 -7.2 72.8 73.5 10.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees