Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-65   GLN-66  8.4 8.4 -11.9 6.4 105.7 107.9 -14.5
 GLN-66   GLU-67  10.6 10.8 -4.5 24.8 170.3 170.1 48.1
 GLU-67   THR-68  10.0 10.2 -9.9 52.0 124.6 110.1 80.1
 THR-68   LEU-69  9.2 10.4 158.9 56.0 109.4 102.2 125.9
 LEU-69   GLU-70  11.7 13.6 154.0 30.2 86.2 45.8 336.0
 GLU-70   ILE-71  12.2 14.8 -168.4 -3.7 139.8 152.0 -533.3
 ILE-71   HIS-72  13.5 13.5 -3.0 -22.9 77.4 90.0 -3.2
 HIS-72   ASP-73  16.2 15.6 3.1 9.5 98.2 91.5 2.9
 ASP-73   LEU-74  17.6 18.5 9.1 -0.8 37.7 25.9 24.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-104   TYR-105  8.2 7.6 -26.5 -1.1 58.6 56.2 79.5
 TYR-105   LYS-106  5.9 5.3 -2.9 1.7 112.7 114.7 -0.1
 LYS-106   LEU-107  4.2 4.0 -9.0 10.0 148.6 156.7 0.1
 LEU-107   TYR-108  3.5 3.7 3.8 -15.9 100.0 95.1 -0.3
 TYR-108   LYS-109  3.7 3.2 6.5 -3.0 115.7 116.0 0.6
 LYS-109   TYR-110  1.1 1.1 5.3 6.0 49.5 45.1 9.1
 TYR-110   ARG-111  2.1 2.2 -10.4 3.7 126.3 126.6 -6.1
 ARG-111   PHE-112  3.3 2.9 -4.0 6.5 64.2 66.3 -32.0
 PHE-112   LEU-113  5.9 5.6 5.1 -24.2 103.9 100.9 25.7
 LEU-113   ASP-114  6.3 6.5 4.7 18.4 40.7 46.8 79.5
 ASP-114   TRP-115  6.9 6.6 -74.3 76.3 146.6 158.6 -7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-116   TYR-117  10.6 10.3 -1.2 -6.0 44.0 41.7 17.1
 TYR-117   GLU-118  12.6 12.5 -8.6 -3.3 34.4 33.5 34.2
 GLU-118   LEU-119  10.5 10.8 9.1 3.5 92.5 95.8 -12.2
 LEU-119   GLU-120  7.3 7.3 -3.4 -6.1 88.0 79.0 6.9
 GLU-120   ARG-121  9.9 9.4 0.0 7.9 156.9 161.5 -20.6
 ARG-121   ASP-122  11.2 10.9 0.9 0.1 123.5 128.8 -5.9
 ASP-122   TRP-123  7.9 7.4 -11.2 3.2 112.3 104.4 -16.2
 TRP-123   LYS-124  7.4 6.8 165.8 53.8 103.3 106.8 120.8
 ASP-137   ASN-138  24.2 24.3 -19.6 11.3 120.9 139.8 -2.5
 ASN-138   PRO-139  26.7 26.0 -16.3 -3.3 150.4 148.5 -38.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees