Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  13.8 13.9 2.9 -7.8 96.7 94.5 19.9
 LEU-109   GLY-110  15.0 15.1 7.9 -9.3 50.4 51.1 -52.1
 GLY-110   ILE-111  17.5 17.7 1.1 -1.9 95.2 93.5 0.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  19.9 19.9 0.4 -6.4 86.1 86.3 71.2
 ASP-216   SER-217  20.3 20.2 -2.0 5.9 116.6 118.4 17.2
 SER-217   LYS-218  18.8 18.8 -6.1 10.1 137.6 139.2 127.6
 LYS-218   GLY-219  19.5 19.6 2.8 -13.8 60.9 61.2 -140.7
 GLY-219   TYR-220  18.1 18.1 -1.7 -4.7 163.5 161.6 -59.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-246   LEU-247  9.9 9.8 3.2 -1.9 90.1 93.9 -14.9
 LEU-247   ASP-248  9.3 9.2 7.5 -8.1 67.4 67.5 -16.0
 ASP-248   LYS-249  6.2 6.2 0.7 -1.6 128.0 125.9 81.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-252   LYS-253  1.2 1.7 -0.8 -3.0 152.9 150.2 -46.7
 LYS-253   TRP-254  0.4 0.7 1.3 3.6 69.0 67.1 -26.0
 TRP-254   TRP-255  4.0 4.3 3.7 -9.6 122.3 121.4 8.7
 TRP-255   TYR-256  5.9 6.1 -4.5 6.3 78.6 73.6 -7.0
 TYR-256   ASP-257  5.2 5.2 6.5 -3.2 52.2 54.9 168.3
 ASP-257   LYS-258  4.8 4.5 2.6 -2.3 38.7 41.9 -79.2
 LYS-258   GLY-259  5.9 6.1 3.9 4.9 108.7 112.8 -109.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees