3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-20   LEU-21  8.9 9.3 -7.1 4.9 28.5 29.9 12.8
 LEU-21   LEU-22  8.4 8.7 -4.4 -1.0 70.6 72.0 53.4
 LEU-22   ASP-23  9.1 9.4 -15.7 15.8 81.3 85.2 16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-27   PRO-28  2.6 2.7 -2.7 0.8 63.7 62.2 17.1
 PRO-28   MET-29  4.1 4.4 -8.4 9.2 12.5 10.7 -46.9
 MET-29   ILE-30  5.0 5.3 1.8 -4.6 120.1 120.0 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-217   ALA-218  7.4 7.5 3.1 -5.7 105.9 104.0 28.5
 ALA-218   ALA-219  10.7 10.7 2.2 3.2 125.0 124.7 -55.1
 ALA-219   THR-220  11.9 11.9 7.1 -16.4 152.6 151.4 81.6
 THR-220   GLY-221  9.7 9.8 -15.4 5.9 38.1 40.7 125.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees