Homoserine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-171   ILE-172  1.1 1.4 29.3 2.9 38.7 39.7 253.1
 ILE-172   PHE-173  2.9 2.9 12.5 -6.3 115.5 118.5 -47.8
 PHE-173   SER-174  4.9 4.8 -24.6 28.2 120.9 116.1 20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-216   GLY-217  9.1 9.3 11.9 -1.7 45.2 40.4 59.7
 GLY-217   LEU-218  7.3 7.4 -6.1 11.2 119.9 126.0 27.8
 LEU-218   ASP-219  10.6 10.7 2.2 0.8 13.1 15.8 16.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-243   GLN-244  8.0 8.0 2.1 4.2 32.1 29.0 80.4
 GLN-244   SER-245  5.1 5.2 5.5 -6.3 81.9 81.0 4.2
 SER-245   LEU-246  5.8 5.9 -6.8 10.0 118.7 121.4 -3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-286   PHE-287  5.8 5.8 6.0 -8.9 96.9 98.9 -11.2
 PHE-287   ILE-288  2.3 2.3 -6.9 17.5 156.8 155.3 81.7
 ILE-288   GLY-289  0.9 0.8 -0.5 2.4 94.0 96.0 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-300   GLY-301  5.1 5.0 23.8 -13.2 28.2 24.7 104.2
 GLY-301   ILE-302  2.8 2.6 -13.9 16.4 80.8 81.3 37.3
 ILE-302   GLU-303  3.3 2.9 13.6 -18.1 106.2 106.2 56.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-319   VAL-320  6.9 6.9 2.5 7.6 54.4 41.5 71.7
 VAL-320   ILE-321  4.8 4.5 18.9 -7.2 88.0 87.6 -52.8
 ILE-321   SER-322  1.9 1.7 -10.6 9.4 116.6 117.7 -38.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees