Chaperone Protein Dnak

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-488   LYS-489  27.0 26.5 -18.6 13.9 53.3 76.7 -0.8
 LYS-489   ASP-490  30.1 29.8 -3.8 -18.0 97.8 96.2 -1.8
 ASP-490   LYS-491  33.8 33.5 5.2 -20.2 148.0 158.8 11.9
 LYS-491   ASN-492  34.2 35.1 39.9 -5.8 131.4 90.4 -9.5
 ASN-492   SER-493  37.6 38.6 1.7 -17.0 112.2 91.4 -3.5
 SER-493   GLY-494  37.8 38.1 18.2 -12.0 115.0 123.6 -3.3
 GLY-494   LYS-495  34.2 34.8 9.1 -12.6 54.3 52.4 2.2
 LYS-495   GLU-496  34.6 33.3 -13.4 -34.2 123.0 94.4 -3.2
 GLU-496   GLN-497  31.2 29.5 -9.2 -15.9 164.5 149.2 -22.8
 GLN-497   LYS-498  30.6 26.8 35.7 -59.7 61.4 104.9 6.8
 LYS-498   ILE-499  28.8 23.0 20.9 -29.5 48.9 40.4 -1.2
 ILE-499   THR-500  25.9 19.5 14.1 -9.4 41.8 130.5 -0.5
 THR-500   ILE-501  24.7 16.3 10.1 -33.2 72.8 48.7 -6.9
 ILE-501   LYS-502  21.1 13.0 22.8 37.7 15.7 121.8 27.6
 LYS-502   ALA-503  20.6 9.5 -3.0 -119.4 102.1 77.1 4.9
 ALA-503   SER-504  17.7 6.8 -57.9 5.4 48.0 136.4 0.1
 SER-504   SER-505  15.3 4.7 -163.7 27.2 108.3 147.0 -88.6
 SER-505   GLY-506  11.9 7.7 -12.9 -8.4 48.9 91.8 6.1
 GLY-506   LEU-507  10.9 8.9 32.9 9.2 75.6 74.8 -5.9
 LEU-507   ASN-508  13.2 8.8 -20.8 28.8 52.5 58.2 -2.4
 ASN-508   GLU-509  16.7 6.8 -11.5 17.4 67.7 76.9 2.2
 GLU-509   ASP-510  19.1 9.3 -4.9 -19.1 127.3 132.6 -7.5
 ASP-510   GLU-511  20.7 11.2 27.2 -20.4 73.0 69.2 2.3
 GLU-511   ILE-512  17.6 11.1 7.7 -6.5 139.7 133.9 3.3
 ILE-512   GLN-513  16.8 12.6 7.4 -1.7 98.2 86.8 -1.8
 GLN-513   LYS-514  20.4 15.1 3.8 1.1 46.6 43.3 2.9
 LYS-514   MET-515  20.8 15.9 -7.1 18.1 84.8 70.1 -1.9
 MET-515   VAL-516  17.8 16.7 -14.5 2.1 34.1 55.8 1.8
 VAL-516   ARG-517  19.1 18.9 0.3 -4.3 75.8 53.2 1.3
 ARG-517   ASP-518  22.5 20.8 2.9 2.2 54.0 57.9 1.4
 ASP-518   ALA-519  21.1 20.7 -18.4 -8.6 59.0 63.6 -0.7
 ALA-519   GLU-520  19.4 22.4 10.6 -12.3 117.5 109.4 -0.9
 GLU-520   ALA-521  22.8 24.7 10.4 -21.0 49.0 40.3 -2.1
 ALA-521   ASN-522  24.7 26.0 8.7 -32.7 77.9 65.9 -3.9
 ASN-522   ALA-523  22.5 26.2 45.6 12.2 140.9 126.7 193.1
 ALA-523   GLU-524  23.4 28.2 6.0 -5.1 87.6 67.3 4.0
 GLU-524   ALA-525  27.1 31.4 1.3 -16.3 42.2 49.4 -3.1
 ALA-525   ASP-526  26.9 29.9 2.8 -0.7 106.8 113.0 -2.6

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees