Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-114   VAL-115  3.6 3.5 8.8 -4.0 71.5 73.2 96.7
 VAL-115   PRO-116  6.0 6.2 4.8 3.3 40.8 40.4 53.7
 PRO-116   PHE-117  8.1 8.4 3.5 -9.5 23.9 25.5 27.6
 PHE-117   GLU-118  6.9 7.3 -1.7 4.3 120.8 119.8 -21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-175   GLU-176  4.8 4.8 -6.3 8.2 123.8 124.3 25.4
 GLU-176   ASP-177  5.7 5.6 0.0 -1.9 85.1 86.1 -71.9
 ASP-177   GLN-178  9.0 8.9 -0.7 3.6 122.5 119.2 84.8
 GLN-178   THR-179  9.7 9.6 -6.8 6.6 172.5 177.9 0.9
 THR-179   LYS-180  8.3 8.3 2.4 -4.1 61.1 60.1 -52.0
 LYS-180   PRO-181  9.4 9.3 7.5 1.3 59.0 62.4 39.7
 PRO-181   VAL-182  12.7 12.7 -5.1 4.5 140.1 141.3 60.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees