Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-105   PHE-106  8.5 8.4 -5.9 8.8 141.8 135.1 -59.7
 PHE-106   MET-107  9.8 9.9 -9.8 15.9 136.5 136.2 37.9
 MET-107   THR-108  7.6 7.6 -3.9 2.9 60.6 57.0 -16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-192   THR-193  5.9 6.3 -6.6 11.4 54.6 57.7 -16.9
 THR-193   THR-194  3.3 3.7 -11.9 1.2 48.3 43.6 69.4
 THR-194   ILE-195  2.1 2.0 6.1 1.0 133.4 134.8 -43.8
 ILE-195   GLU-196  5.3 5.4 -10.8 5.6 43.4 45.5 34.1
 GLU-196   PHE-197  4.9 5.3 14.5 -7.7 135.6 131.0 -23.5
 PHE-197   VAL-198  1.4 1.8 -8.4 -5.1 52.6 42.4 70.7
 VAL-198   THR-199  4.0 3.5 23.2 2.8 133.7 125.4 -148.1
 THR-199   GLN-200  6.3 6.0 -16.1 -22.4 41.6 34.4 293.3
 GLN-200   ARG-201  4.2 4.7 39.4 -9.9 134.7 120.8 -227.8
 ARG-201   ASN-202  3.0 2.1 -23.6 9.3 107.0 115.7 -20.6
 ARG-201   ASN-202  3.0 2.1 -23.6 9.3 107.0 115.7 -20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-201   ASN-202  3.0 2.1 -23.6 9.3 107.0 115.7 -20.6
 ARG-201   ASN-202  3.0 2.1 -23.6 9.3 107.0 115.7 -20.6
 ASN-202   CYS-203  6.8 5.7 30.4 -29.6 85.5 86.1 53.6
 CYS-203   ASN-204  8.8 8.1 11.0 -5.0 103.8 100.7 -45.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-214   LYS-215  8.6 8.5 -11.6 48.6 121.2 118.6 142.6
 LYS-215   GLY-216  5.3 4.9 0.0 -6.1 122.8 105.0 -38.7
 GLY-216   TYR-217  4.5 4.6 -11.7 2.6 90.5 85.8 -6.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees