Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-123   LEU-124  2.9 1.4 12.9 -8.1 30.5 38.4 1.7
 LEU-124   THR-125  2.5 2.3 -14.1 32.0 106.9 99.8 8.5
 THR-125   ALA-126  5.5 4.2 -29.6 -18.8 45.8 52.7 44.0
 ALA-126   ARG-127  5.7 5.9 28.0 11.0 78.5 82.8 3.5
 ARG-127   TRP-128  7.0 7.1 -1.7 -3.4 117.1 111.5 -0.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-160   GLU-161  9.0 8.9 -8.7 -8.5 67.5 53.0 24.1
 GLU-161   ASP-162  7.3 7.7 -3.2 -7.7 111.1 95.4 -1.6
 ASP-162   ASP-163  3.8 4.2 17.2 17.7 23.6 29.5 34.2
 ASP-163   LYS-164  5.0 3.7 51.4 -31.2 87.0 89.0 15.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees