Igm-Kappa Cold Agglutinin (Light Chain)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-107   LYS-108  14.2 14.2 2.8 1.4 155.9 154.4 -121.3
 LYS-108   ARG-109  16.3 16.4 3.0 0.7 123.6 128.4 76.3
 ARG-109   THR-110  16.1 16.2 8.4 -18.3 157.9 150.5 53.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-135   LEU-136  8.5 8.8 11.0 -15.4 134.9 136.2 199.6
 LEU-136   LEU-137  5.1 5.4 -28.0 15.1 110.8 102.9 -32.4
 LEU-137   ASN-138  3.6 3.6 3.7 -2.0 124.1 127.0 -388.5
 ASN-138   ASN-139  1.5 1.6 12.0 7.9 95.0 88.7 107.4
 ASN-139   PHE-140  4.8 4.9 -2.2 -1.6 107.8 105.6 89.9
 ASN-139   PHE-140  4.8 4.9 -2.2 -1.6 107.8 105.6 89.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-139   PHE-140  4.8 4.9 -2.2 -1.6 107.8 105.6 89.9
 ASN-139   PHE-140  4.8 4.9 -2.2 -1.6 107.8 105.6 89.9
 PHE-140   TYR-141  7.4 7.4 -4.7 5.6 38.4 40.0 -46.6
 TYR-141   PRO-142  10.7 10.8 3.9 1.6 61.0 62.0 -4.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-143   GLU-144  10.6 10.7 3.0 -1.0 117.8 116.7 -64.3
 GLU-144   ALA-145  13.1 13.1 9.8 -15.3 158.8 158.0 143.2
 ALA-145   LYS-146  11.9 12.0 -15.4 26.3 85.0 86.5 -128.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-160   GLN-161  17.6 17.3 -0.8 7.7 26.8 27.1 -276.8
 GLN-161   GLU-162  15.2 15.0 -12.6 23.8 104.0 100.4 -56.4
 GLU-162   SER-163  11.7 11.7 -0.1 -3.4 27.6 28.9 120.7
 SER-163   VAL-164  8.9 8.8 -14.9 6.3 106.6 102.5 68.7
 VAL-164   THR-165  6.0 6.1 0.0 -6.0 134.2 130.3 133.5
 THR-165   GLU-166  2.6 2.6 11.1 -14.8 122.4 122.7 123.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-175   LEU-176  2.5 2.3 -3.8 -2.2 106.6 104.5 -1.7
 LEU-176   SER-177  5.1 5.1 -0.4 -8.3 59.8 56.7 83.1
 SER-177   SER-178  7.2 7.2 3.6 -0.2 93.5 91.9 -34.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-194   CYS-195  13.1 13.3 4.1 -8.8 148.1 149.3 224.2
 CYS-195   GLU-196  11.3 11.4 -7.7 9.2 106.2 104.8 -290.3
 GLU-196   VAL-197  11.9 11.9 5.5 -11.6 140.5 140.2 98.7
 VAL-197   THR-198  10.6 10.8 -1.2 7.0 101.2 96.3 230.4
 THR-198   HIS-199  12.9 13.1 3.8 7.9 142.5 142.4 -407.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-205   VAL-206  12.6 12.7 -1.6 -3.4 122.1 122.8 -159.3
 VAL-206   THR-207  9.1 9.2 17.4 -21.8 97.6 95.2 -67.9
 THR-207   LYS-208  9.5 9.2 11.5 -18.5 77.0 75.4 49.6
 LYS-208   SER-209  7.5 7.7 1.1 -4.1 84.6 88.8 -28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees