Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  4.8 4.4 -1.4 11.3 143.0 144.2 32.8
 GLY-109   ILE-110  1.6 1.2 -45.5 28.4 65.4 68.1 52.3
 ILE-110   SER-111  2.2 2.7 -0.8 -6.5 70.6 75.0 17.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  10.3 10.4 16.7 -20.9 91.6 83.8 -32.2
 GLY-209   LEU-210  8.8 8.0 9.2 2.4 94.7 102.9 13.8
 LEU-210   ILE-211  5.3 4.4 1.4 24.3 157.4 162.9 -101.5
 ILE-211   ASP-212  3.6 4.0 163.0 176.1 99.0 128.8 -25.2
 ASP-212   SER-213  0.5 0.8 134.7 -77.7 64.6 62.3 154.5
 SER-213   LYS-214  4.0 3.8 -11.1 24.1 89.6 94.5 82.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees