Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-328   GLN-329  12.1 12.1 -4.2 2.4 83.9 92.4 -98.6
 GLN-329   ASN-330  12.4 12.4 -4.5 -6.7 73.5 71.8 126.4
 ASN-330   LEU-331  15.7 15.6 31.3 -7.2 44.7 42.7 132.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-681   LEU-682  12.7 12.7 3.8 13.6 83.8 76.5 76.3
 LEU-682   LEU-683  9.3 9.5 2.7 -15.4 65.7 67.0 -57.4
 LEU-683   GLU-684  11.1 11.3 6.2 -8.2 136.6 140.2 128.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees