Amp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-29   TRP-30  8.2 7.8 1.3 -2.6 64.6 62.7 -32.0
 TRP-30   GLU-31  6.4 6.1 8.8 9.7 24.5 25.7 87.4
 GLU-31   ASN-32  6.9 6.7 -15.1 11.9 92.7 85.3 -42.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-91   LYS-92  5.7 6.6 -0.3 -15.8 99.2 101.8 -26.4
 LYS-92   ARG-93  2.7 3.5 2.8 -1.1 118.7 112.4 3.7
 ARG-93   ILE-94  1.3 2.0 3.6 -13.6 64.8 61.6 -47.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-104   LYS-105  4.2 4.1 7.6 -0.3 49.2 50.8 16.4
 LYS-105   LEU-106  3.0 2.5 -3.2 -8.8 102.6 112.8 40.3
 LEU-106   GLU-107  1.9 1.5 2.3 -2.5 93.3 88.5 -11.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-120   GLU-121  2.9 3.0 1.9 7.4 26.0 22.5 49.6
 GLU-121   TYR-122  2.1 2.0 -7.3 5.7 127.6 122.4 21.9
 TYR-122   VAL-123  2.4 3.1 1.7 11.4 54.1 54.7 25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-183   ASP-184  7.8 7.8 16.4 -15.6 40.4 43.4 39.2
 ASP-184   PHE-185  9.2 9.6 0.8 16.4 36.3 41.3 50.2
 PHE-185   GLY-186  8.6 8.9 -12.1 20.8 146.4 138.3 27.8
 GLY-186   PHE-187  10.2 11.0 -8.4 1.9 117.6 134.8 -26.5
 PHE-187   ALA-188  13.1 13.3 -1.7 3.5 106.2 106.1 28.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-314   ILE-315  12.8 12.5 -0.1 -0.2 118.3 110.5 -44.1
 ILE-315   PRO-316  9.0 8.8 5.6 -15.9 107.0 101.6 17.2
 PRO-316   LYS-317  7.8 6.7 6.2 21.8 118.6 118.9 -105.6
 LYS-317   PHE-318  5.4 4.2 61.3 -66.2 87.5 68.0 -63.2
 PHE-318   LYS-319  6.8 3.2 14.8 -31.7 128.9 132.1 105.0
 LYS-319   GLY-320  7.6 4.7 -110.1 8.0 114.5 119.8 -229.4
 GLY-320   PRO-321  8.8 6.2 67.7 -5.1 71.0 18.8 394.6
 PRO-321   GLY-322  7.9 7.0 6.1 25.8 49.1 81.7 82.1
 GLY-322   ASP-323  9.7 8.4 -73.2 171.9 98.0 50.7 13.7
 ASP-323   THR-324  11.3 7.7 129.7 177.4 106.1 54.5 -164.1
 THR-324   SER-325  9.9 9.2 166.8 96.7 112.9 120.7 285.6
 SER-325   ASN-326  13.1 10.1 5.1 3.1 53.8 71.4 -5.1
 ASN-326   PHE-327  13.1 9.7 43.6 -63.4 18.8 38.7 -80.7
 PHE-327   ASP-328  11.8 12.1 -152.2 154.6 105.7 72.9 -132.6
 ASP-328   ASP-329  15.0 15.8 24.7 -12.5 88.9 72.4 -60.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees