Pyruvate Kinase, M2 Isozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-114   GLY-115  6.8 6.5 -7.8 -13.6 69.5 70.5 48.1
 GLY-115   PRO-116  3.7 3.6 24.2 -2.5 99.9 113.9 -9.2
 PRO-116   GLU-117  5.3 5.7 -82.2 76.2 22.2 35.4 12.6
 GLU-117   ILE-118  7.7 7.4 -18.0 -4.5 86.0 82.6 49.1
 ILE-118   ARG-119  11.0 10.6 9.1 -19.5 111.1 112.8 33.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   LEU-217  11.9 12.1 -2.5 -7.1 44.5 40.8 31.6
 LEU-217   PRO-218  9.8 9.8 -7.0 -10.3 46.7 62.4 41.5
 PRO-218   ALA-219  8.2 7.9 -4.5 -12.3 107.3 106.2 10.5
 ALA-219   VAL-220  5.3 4.7 3.8 8.4 98.2 132.5 -23.0
 VAL-220   SER-221  3.2 3.4 -50.2 6.5 80.4 64.3 75.1
 SER-221   GLU-222  6.0 6.1 3.1 5.3 158.6 154.2 -25.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees