Anhydro-N-Acetylmuramic Acid Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-143   PRO-144  3.7 3.7 -8.3 14.8 111.7 113.8 71.0
 PRO-144   ALA-145  4.8 4.9 -13.0 5.0 166.6 170.0 -155.5
 ALA-145   PHE-146  6.0 6.0 -3.0 1.2 121.5 121.9 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-224   ASP-225  8.0 7.9 -9.3 0.5 78.7 72.2 40.3
 ASP-225   GLU-226  6.8 6.9 -9.9 4.2 48.8 49.6 159.6
 GLU-226   PHE-227  10.0 10.2 4.8 0.8 173.3 171.1 -104.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-236   GLY-237  7.9 7.9 15.8 -21.1 77.8 81.1 -44.2
 GLY-237   ARG-238  8.6 8.4 6.3 -11.9 151.7 153.5 98.3
 ARG-238   GLU-239  10.1 10.0 -1.5 1.2 43.2 41.6 12.2
 GLU-239   ARG-240  11.6 11.5 -5.5 14.3 47.8 50.9 -208.2
 ARG-240   PHE-241  8.6 8.4 -5.7 -2.0 67.1 70.1 245.2
 PHE-241   ASN-242  5.8 5.8 -1.6 0.0 88.2 88.2 -100.0
 ASN-242   LEU-243  8.2 8.2 2.4 -12.6 149.9 147.2 195.5
 LEU-243   PRO-244  9.4 9.2 12.1 -6.0 144.1 149.3 -124.5
 PRO-244   TRP-245  9.9 9.6 -12.3 20.6 81.2 84.3 -57.0
 TRP-245   LEU-246  6.7 6.5 -9.9 6.2 67.8 66.8 92.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-316   GLU-317  13.6 13.2 7.1 -17.6 122.9 125.2 151.2
 GLU-317   TYR-318  15.2 15.1 39.5 -14.1 141.6 121.9 -533.7
 TYR-318   GLY-319  12.3 12.1 0.7 -11.6 127.0 128.0 158.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-323   TRP-324  11.4 11.1 9.3 -5.9 55.3 53.0 49.5
 TRP-324   MET-325  10.3 10.2 -10.5 8.5 105.8 106.9 -24.6
 MET-325   GLU-326  6.6 6.4 1.9 -3.9 95.4 97.8 -74.3
 GLU-326   GLY-327  6.5 6.5 -3.8 7.8 127.6 129.0 87.8
 GLY-327   MET-328  9.6 9.6 -3.3 -1.4 155.2 152.5 -69.0
 MET-328   ALA-329  7.5 7.4 -3.2 7.8 90.9 90.4 25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees