Serum Transferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-89   ASP-90  2.5 3.7 -6.8 2.3 41.0 41.9 -0.9
 ASP-90   PRO-91  4.2 5.2 -20.5 11.3 35.4 44.9 26.2
 PRO-91   GLN-92  2.2 2.6 9.8 -5.7 153.3 160.9 -12.7
 GLN-92   THR-93  2.3 2.3 8.9 -18.8 132.5 121.4 10.4
 THR-93   PHE-94  3.0 3.0 -53.5 23.3 24.5 15.8 44.6
 PHE-94   TYR-95  1.7 2.9 4.5 4.3 80.7 85.0 6.8
 TYR-95   TYR-96  3.5 4.3 -12.2 -1.5 39.7 36.7 24.1
 TYR-96   ALA-97  6.7 7.2 2.0 1.5 128.4 128.1 -9.7
 ALA-97   VAL-98  7.5 7.5 -9.3 9.7 83.7 78.0 1.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-243   ALA-244  10.2 10.3 1.5 3.1 95.7 98.3 -0.5
 ALA-244   GLN-245  7.6 7.7 -7.0 0.1 31.4 24.8 10.2
 GLN-245   VAL-246  5.6 6.3 1.4 2.3 65.7 79.3 -1.4
 VAL-246   PRO-247  1.9 2.7 -33.9 -8.7 41.8 34.7 51.5
 PRO-247   SER-248  2.6 3.5 -20.5 -0.5 71.0 91.1 1.0
 SER-248   HIS-249  3.4 3.3 138.0 -72.4 62.2 82.6 33.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-324   ASN-325  5.8 6.2 4.2 6.5 135.8 145.9 -20.8
 ASN-325   LEU-326  4.5 4.7 -46.1 35.8 76.4 74.4 11.8
 LEU-326   ARG-327  0.8 1.2 5.2 -11.6 134.3 109.1 1.5
 ARG-327   GLU-328  3.4 4.7 5.9 5.5 158.1 151.1 -1.9
 GLU-328   GLY-329  4.1 6.0 44.7 5.7 91.0 134.4 -28.8
 GLY-329   THR-330  4.2 3.7 -95.4 20.0 36.6 56.5 111.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees