Undecaprenyl Pyrophosphate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-49   GLU-50  12.1 12.2 22.6 -6.7 81.5 78.0 43.1
 GLU-50   CYS-51  10.9 10.8 -5.8 1.0 77.9 82.4 0.5
 CYS-51   LEU-52  7.4 7.3 1.5 3.3 110.0 109.6 -1.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-86   TYR-87  3.8 4.1 -8.8 5.1 122.0 123.1 -45.6
 TYR-87   LEU-88  0.9 1.1 2.3 -6.2 130.9 128.6 44.7
 LEU-88   ASP-89  1.9 1.6 -9.8 16.2 65.6 64.1 -94.0
 ASP-89   ASN-90  3.7 3.7 -32.0 38.1 121.2 125.8 122.3
 ASN-90   ASN-91  6.1 5.9 1.3 -3.1 62.1 60.6 42.1
 ASN-91   ILE-92  6.3 6.2 -22.8 25.8 171.6 169.8 20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees