Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-40   ALA-41  9.7 9.7 -1.7 -3.8 122.3 123.1 -162.3
 ALA-41   VAL-42  8.3 8.3 2.4 -3.1 132.1 132.5 164.7
 VAL-42   VAL-43  7.3 7.3 -1.2 0.2 113.9 114.9 -97.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-47   THR-48  17.6 17.6 -2.1 -3.7 133.6 133.1 -132.2
 THR-48   GLY-49  14.6 14.5 2.0 -1.8 102.9 103.4 34.4
 GLY-49   GLU-50  13.7 13.7 1.1 -3.4 92.1 89.9 54.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-54   THR-55  19.9 20.0 0.1 1.4 34.9 37.8 13.9
 THR-55   HIS-56  21.7 21.8 1.8 -7.6 40.6 39.6 -252.2
 HIS-56   GLU-57  20.7 20.7 5.2 -1.7 78.4 78.2 177.4
 GLU-57   GLU-58  19.4 19.4 -3.7 1.2 49.5 49.5 -81.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-74   VAL-75  8.0 8.1 -0.1 0.3 111.6 111.2 52.9
 VAL-75   LYS-76  6.1 6.1 2.2 -7.0 128.4 130.1 160.3
 LYS-76   VAL-77  6.9 6.8 3.0 1.1 63.8 62.4 -58.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees