D-Galactose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-107   VAL-108  17.3 17.5 -5.5 1.5 63.1 60.8 -6.2
 VAL-108   GLY-109  14.7 15.0 -0.5 16.6 88.2 87.1 -1.1
 GLY-109   THR-110  11.2 11.4 52.0 -0.4 53.3 74.5 85.1
 THR-110   ASP-111  7.8 8.2 37.5 -30.7 66.4 14.1 -22.3
 ASP-111   SER-112  6.4 6.4 -40.4 8.9 59.6 83.0 36.3
 SER-112   LYS-113  5.5 5.7 -13.6 0.5 115.4 113.7 -8.2
 LYS-113   GLU-114  3.4 3.2 -12.3 9.3 70.3 62.2 -9.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-253   VAL-254  6.9 6.7 1.9 -5.8 114.5 112.3 11.1
 VAL-254   LEU-255  3.6 3.1 3.8 18.3 62.4 55.6 43.5
 LEU-255   ASN-256  0.9 0.3 -6.1 -13.4 48.0 58.2 36.1
 ASN-256   ASP-257  3.1 3.5 -1.7 2.8 130.3 137.1 0.1
 ASP-257   ALA-258  5.7 5.6 8.1 -4.7 75.6 71.3 -5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-292   VAL-293  11.0 11.0 -4.2 11.3 33.7 48.6 -29.8
 VAL-293   PRO-294  9.4 9.2 28.1 -10.1 83.4 76.7 7.1
 PRO-294   TYR-295  6.7 6.6 8.4 -19.5 134.5 125.2 26.4
 TYR-295   VAL-296  3.3 3.0 -1.8 -5.0 77.6 80.1 27.4
 VAL-296   GLY-297  5.1 4.4 -2.7 1.6 72.4 80.1 26.8
 GLY-297   VAL-298  6.5 5.5 11.7 -11.5 158.8 154.2 9.3
 VAL-298   ASP-299  7.3 6.8 2.0 4.6 101.2 94.4 1.1
 ASP-299   LYS-300  10.7 10.3 -10.8 8.7 45.0 40.0 -0.2
 LYS-300   ASP-301  13.4 13.0 -17.2 0.8 97.9 92.8 15.2
 ASP-301   ASN-302  14.2 14.3 10.0 -5.3 116.1 104.4 -3.9
 ASN-302   LEU-303  11.3 11.6 -1.8 11.0 43.7 44.7 -19.1
 LEU-303   ALA-304  9.6 9.4 -19.1 17.8 35.1 43.8 17.5
 ALA-304   GLU-305  10.8 10.7 6.2 -35.3 87.5 82.6 -7.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees