Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.9 3.8 -7.6 4.0 56.3 53.6 11.4
 LEU-109   GLY-110  0.3 0.3 7.5 19.3 49.4 53.8 73.5
 GLY-110   ILE-111  3.4 3.5 -10.1 -4.6 56.3 56.2 25.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.8 9.0 -0.5 -0.7 40.6 35.0 6.9
 ASP-216   SER-217  5.6 5.8 -1.9 -0.9 108.7 109.9 6.8
 SER-217   LYS-218  1.9 2.2 4.2 -25.9 97.8 108.6 32.8
 LYS-218   GLY-219  2.2 2.0 8.7 14.3 62.2 48.7 48.7
 GLY-219   TYR-220  4.7 4.8 19.1 -4.6 74.2 75.1 -0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-255   TYR-256  4.7 4.8 -11.1 0.3 50.4 47.5 37.2
 TYR-256   ASP-257  6.9 6.4 24.7 -3.0 145.4 141.7 -55.6
 ASP-257   LYS-258  9.2 8.8 6.7 -15.0 132.8 147.1 23.8
 LYS-258   GLY-259  6.6 6.3 -15.0 34.8 86.9 83.5 5.9
 GLY-259   GLU-260  4.2 3.5 -7.5 -2.6 18.1 18.5 48.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees