Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  4.5 4.2 13.0 -8.0 79.0 93.9 -9.4
 PRO-87   GLU-88  0.8 0.4 -73.1 10.9 38.6 41.2 112.8
 GLU-88   ILE-89  3.5 3.4 20.6 -17.3 86.4 74.8 -22.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-186   PRO-187  5.8 4.3 -31.1 16.9 65.5 68.3 8.9
 PRO-187   ALA-188  5.3 3.9 -11.5 -0.3 117.2 118.8 -6.4
 ALA-188   VAL-189  6.3 4.9 24.8 -4.2 102.6 122.8 -18.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees