Amidase Operon

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-134   LEU-135  17.6 17.6 -9.8 -0.1 85.8 81.2 86.6
 LEU-135   ILE-136  16.7 17.0 1.4 3.6 117.0 112.3 -40.2
 ILE-136   ARG-137  20.3 20.7 19.9 12.0 165.8 163.1 -566.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-226   PRO-227  15.0 14.9 -5.9 -8.3 79.2 82.5 90.2
 PRO-227   PRO-228  14.4 14.6 -5.0 1.9 72.1 69.2 18.0
 PRO-228   ILE-229  11.0 11.2 -5.3 2.3 8.9 16.0 73.2
 ILE-229   ALA-230  9.9 10.1 2.1 -14.3 97.2 93.8 132.4
 ALA-230   SER-231  10.3 10.3 -13.8 16.0 17.7 8.4 -128.3
 SER-231   LEU-232  8.9 9.0 -14.7 16.2 81.8 75.7 -88.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-245   VAL-246  7.9 7.7 1.3 10.3 134.4 136.1 -147.6
 VAL-246   ALA-247  8.0 7.9 -0.4 -3.1 79.2 81.8 -36.2
 ALA-247   GLU-248  4.3 4.2 25.2 -0.6 45.3 41.3 406.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-344   ILE-345  6.3 6.2 -5.6 -3.9 83.6 82.7 71.6
 ILE-345   ASP-346  2.6 2.5 -2.0 -24.4 27.8 25.6 454.8
 ASP-346   ALA-347  1.0 0.8 20.1 6.4 87.8 81.5 -261.0
 ALA-347   ARG-348  2.8 2.9 11.3 -12.0 67.1 71.4 -94.3
 ARG-348   GLY-349  4.7 5.0 -2.0 -6.2 26.8 22.4 165.7
 ARG-348   GLY-349  4.7 5.0 -2.0 -6.2 26.8 22.4 165.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-348   GLY-349  4.7 5.0 -2.0 -6.2 26.8 22.4 165.7
 ARG-348   GLY-349  4.7 5.0 -2.0 -6.2 26.8 22.4 165.7
 GLY-349   VAL-350  3.5 3.8 1.4 -3.5 100.8 95.0 80.4
 VAL-350   PHE-351  4.8 5.0 -3.8 2.8 84.7 88.0 66.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees