Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-86   GLY-87  14.0 14.4 -4.6 13.6 90.2 94.4 -18.9
 GLY-87   PRO-88  10.6 11.1 -26.4 13.2 133.1 130.4 -28.7
 PRO-88   GLU-89  8.9 10.3 98.0 -70.7 29.1 23.4 73.5
 GLU-89   ILE-90  9.9 10.1 -1.3 26.2 142.5 124.6 77.8
 ILE-90   ARG-91  9.6 9.4 6.2 9.1 43.7 39.0 49.2
 ARG-91   THR-92  12.1 12.0 -34.7 55.2 136.7 145.1 -41.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-182   CYS-183  5.0 5.3 98.7 -68.5 42.6 70.4 109.7
 CYS-183   GLU-184  5.2 4.5 -17.8 23.0 145.8 158.0 -4.3
 GLU-184   VAL-185  4.3 5.1 -14.1 -27.9 88.8 69.0 27.2
 VAL-185   ASP-186  4.9 5.1 12.4 2.5 48.1 41.6 42.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-265   LEU-266  9.6 10.0 -6.2 -9.9 84.6 87.4 -1.8
 LEU-266   GLY-267  9.6 9.9 4.7 -1.1 36.4 29.6 22.3
 GLY-267   VAL-268  11.8 11.9 -4.9 37.5 145.5 142.9 113.7
 VAL-268   GLU-269  8.8 8.8 -4.9 -19.6 77.1 91.4 -1.4
 GLU-269   ILE-270  6.4 7.5 1.2 5.0 92.7 92.4 -32.7
 ILE-270   PRO-271  9.4 10.9 -17.1 -4.7 125.4 120.1 -65.4
 PRO-271   ALA-272  12.5 14.3 1.9 -5.6 112.3 122.7 -2.1
 ALA-272   GLU-273  14.6 16.4 10.0 -4.1 129.8 131.9 -14.8
 GLU-273   LYS-274  17.6 19.1 4.3 -20.1 154.8 145.9 71.3
 LYS-274   VAL-275  15.7 16.6 1.1 -6.1 134.5 122.9 -18.8
 VAL-275   VAL-276  15.1 15.3 -6.7 1.2 53.7 53.3 6.1
 VAL-276   VAL-277  18.7 18.9 2.9 -11.3 142.9 145.0 43.6
 VAL-277   ALA-278  18.0 18.7 -3.7 10.9 52.9 52.7 -45.0
 ALA-278   GLN-279  14.5 15.1 -1.0 3.9 50.7 55.7 -4.0
 GLN-279   MET-280  16.6 16.6 -0.7 5.0 40.1 36.3 -19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees