Rna-Directed RNA Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-15   PRO-16  17.2 17.0 -48.3 4.5 110.8 103.3 11.8
 PRO-16   GLU-17  14.4 13.7 -28.4 89.3 45.0 77.3 -268.9
 GLU-17   GLU-18  11.1 10.7 5.9 -3.2 65.2 43.3 -41.5
 GLU-18   GLU-19  9.2 10.8 8.4 32.8 122.7 82.1 -81.1
 GLU-19   LYS-20  5.6 8.7 -179.8 32.9 81.1 67.0 284.8
 LYS-20   LEU-21  6.9 9.8 17.9 -27.6 105.6 39.3 -120.7
 LEU-21   PRO-22  10.2 12.8 34.3 6.4 35.0 78.5 331.5
 PRO-22   ILE-23  12.9 13.5 -166.6 -53.6 84.9 57.3 -412.3
 ILE-23   ASN-24  15.4 16.6 -7.8 68.5 87.8 31.3 -194.7
 ASN-24   PRO-25  18.9 16.8 -42.2 -11.0 57.0 70.0 190.7
 PRO-25   LEU-26  22.1 20.6 7.0 -16.2 170.8 162.2 53.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-35   LYS-36  9.5 9.3 -6.5 -4.2 141.4 142.1 -52.7
 LYS-36   VAL-37  9.0 8.6 4.2 -1.3 58.9 58.4 49.5
 VAL-37   TYR-38  7.9 7.4 0.1 -11.2 119.5 120.7 90.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-144   PHE-145  6.7 5.6 -5.0 6.7 55.5 58.9 -7.0
 PHE-145   CYS-146  5.0 4.2 4.0 1.3 55.1 56.0 26.6
 CYS-146   VAL-147  6.9 6.7 6.0 -10.4 82.8 80.5 109.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-152   GLY-153  10.2 10.3 -48.3 -2.3 72.4 59.3 195.2
 GLY-153   LYS-154  7.3 7.4 111.8 -60.1 61.4 69.0 209.5
 LYS-154   LYS-155  3.5 4.0 -33.0 16.5 126.1 125.0 -107.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-189   SER-190  8.1 8.1 4.5 2.2 37.3 42.8 51.0
 SER-190   TYR-191  6.4 6.1 -5.7 15.2 153.4 155.3 48.1
 TYR-191   GLY-192  9.1 8.7 8.8 -0.4 62.6 57.7 -2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-199   ARG-200  12.5 12.3 -0.7 1.7 84.2 86.5 26.4
 ARG-200   VAL-201  9.2 8.9 -2.5 6.1 105.4 109.6 2.4
 VAL-201   GLU-202  10.3 10.4 -7.9 4.6 173.5 174.6 3.2
 GLU-202   TYR-203  11.1 11.2 -3.9 2.8 114.6 117.5 -26.9
 TYR-203   LEU-204  7.6 7.7 2.4 -1.0 96.9 94.7 -10.0
 LEU-204   LEU-205  6.3 6.5 -1.5 1.7 124.9 128.5 -2.1
 LEU-204   LEU-205  6.3 6.5 -1.5 1.7 124.9 128.5 -2.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-204   LEU-205  6.3 6.5 -1.5 1.7 124.9 128.5 -2.1
 LEU-204   LEU-205  6.3 6.5 -1.5 1.7 124.9 128.5 -2.1
 LEU-205   LYS-206  9.4 9.6 4.2 -3.7 19.0 18.4 27.1
 LYS-206   ALA-207  7.9 8.2 0.9 -1.9 83.6 80.6 -0.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-212   ASP-213  11.3 11.2 -10.9 6.4 139.2 137.6 -17.8
 ASP-213   PRO-214  12.9 13.0 3.2 -11.6 39.9 34.2 -1.6
 PRO-214   MET-215  10.4 10.8 14.9 -11.4 37.6 35.7 16.0
 MET-215   GLY-216  10.6 10.9 0.9 6.5 65.5 58.0 66.3
 GLY-216   PHE-217  7.9 8.4 -3.3 0.7 153.3 146.9 -56.9
 PHE-217   SER-218  7.6 8.1 0.0 -7.8 113.4 116.5 1.2
 SER-218   TYR-219  5.4 5.8 8.9 -17.6 68.2 60.6 25.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-312   MET-313  2.1 2.0 2.4 0.7 8.9 6.7 4.1
 MET-313   LEU-314  2.9 2.7 -1.9 5.4 113.4 112.6 -29.3
 LEU-314   VAL-315  3.0 2.6 14.2 -4.3 36.6 37.2 53.1
 VAL-315   CYS-316  5.7 5.2 -4.4 17.1 123.7 131.5 155.7
 CYS-316   GLY-317  7.0 5.8 -69.7 51.6 138.6 133.9 -118.4
 GLY-317   ASP-318  9.2 8.1 6.2 17.3 90.8 85.2 -54.7
 ASP-318   ASP-319  8.0 7.5 -21.6 -9.0 76.5 66.0 8.7
 ASP-319   LEU-320  4.3 3.9 13.8 -22.2 168.3 172.4 55.3
 ASP-319   LEU-320  4.3 3.9 13.8 -22.2 168.3 172.4 55.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-319   LEU-320  4.3 3.9 13.8 -22.2 168.3 172.4 55.3
 ASP-319   LEU-320  4.3 3.9 13.8 -22.2 168.3 172.4 55.3
 LEU-320   VAL-321  4.1 3.5 4.8 7.2 107.0 111.2 -43.5
 VAL-321   VAL-322  2.5 2.5 -3.3 9.5 21.1 23.3 -31.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-323   SER-324  5.0 5.3 -2.0 5.6 152.2 153.5 20.0
 SER-324   GLU-325  7.2 7.2 7.7 -6.8 66.5 60.3 -6.2
 GLU-325   SER-326  10.0 9.9 -1.9 7.8 61.9 63.3 -43.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-349   PRO-350  15.6 14.9 14.6 -13.1 70.0 75.7 -36.6
 PRO-350   GLY-351  13.0 12.0 16.7 23.5 11.3 15.1 336.6
 GLY-351   ASP-352  11.6 10.6 0.4 -21.8 95.7 92.1 -7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-361   LEU-362  11.7 12.8 -5.9 -7.4 43.1 50.1 120.5
 LEU-362   ILE-363  11.0 12.0 5.4 -8.8 93.5 91.0 -26.7
 ILE-363   THR-364  7.3 8.3 -11.2 -2.9 52.7 54.8 52.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-365   CYS-366  2.6 2.3 43.0 -1.8 44.5 84.6 185.6
 CYS-366   SER-367  3.3 3.1 -6.3 -1.4 128.7 136.3 -15.5
 SER-367   SER-368  4.0 3.3 9.2 -29.2 110.0 99.8 53.1
 SER-368   ASN-369  7.0 6.6 19.6 -12.3 136.5 146.7 -42.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-395   ALA-396  15.2 14.3 21.6 -39.9 163.5 168.7 147.8
 ALA-396   TRP-397  15.2 13.6 61.0 -44.4 122.3 126.1 -78.7
 TRP-397   GLU-398  13.4 12.1 163.6 -57.6 81.4 109.9 -152.6
 GLU-398   THR-399  16.2 14.8 134.9 -65.6 106.6 140.3 -694.4
 THR-399   VAL-400  18.9 14.8 -150.4 56.6 23.0 77.0 578.5
 VAL-400   ARG-401  18.2 17.6 -11.8 16.6 82.6 140.7 19.1
 ARG-401   HIS-402  17.1 17.9 -111.7 -58.5 151.7 158.8 1822.9
 HIS-402   SER-403  19.5 16.6 2.8 -4.7 72.4 87.6 -33.4
 SER-403   PRO-404  18.2 18.2 -14.2 -29.7 134.0 150.3 -354.9
 PRO-404   ILE-405  20.5 16.7 22.7 52.4 27.3 44.6 -2344.1
 ILE-405   ASN-406  17.9 20.0 -153.7 39.3 82.4 153.8 1979.2
 ASN-406   SER-407  17.9 19.2 -135.7 -0.2 132.2 122.4 -824.8
 SER-407   TRP-408  14.6 15.8 -10.9 8.3 105.8 111.9 33.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees