Potassium Channel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-25   LEU-26  27.2 27.5 45.9 -44.8 62.2 71.7 -25.8
 LEU-26   GLY-27  29.5 29.8 3.1 -54.1 91.1 87.8 -35.2
 ASP-35   ASP-36  17.6 21.7 -18.1 -55.3 62.0 54.8 155.0
 ASP-36   HIS-37  18.6 18.5 93.4 9.0 57.5 53.0 306.3
 HIS-37   TYR-38  17.3 16.3 -47.4 23.0 84.7 76.9 0.7
 TYR-38   HIS-39  13.7 12.7 24.1 -2.4 135.0 124.0 -52.0
 HIS-39   ASP-40  13.7 13.9 -59.5 43.3 104.3 122.4 -52.4
 ASP-40   LEU-41  16.1 16.5 -5.6 21.3 124.8 134.5 43.0
 LEU-41   LEU-42  13.9 14.0 -28.2 3.9 54.3 66.8 64.3
 LEU-42   THR-43  12.0 12.2 -8.5 34.6 60.5 68.6 -55.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-133   ARG-134  5.7 5.7 -14.7 2.7 108.4 106.4 -18.8
 ARG-134   PHE-135  9.4 9.5 4.3 -15.5 70.0 87.6 -43.3
 PHE-135   THR-136  9.6 10.2 -10.4 20.4 157.2 138.3 40.4
 THR-136   ARG-137  7.4 8.5 15.8 33.9 49.4 17.2 201.0
 ARG-137   PRO-138  9.3 10.3 53.7 -18.7 81.6 68.3 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees