Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-504   MET-505  4.4 5.7 -0.2 17.2 147.5 148.7 9.6
 MET-505   THR-506  4.1 4.1 -35.1 36.3 133.3 140.8 1.8
 THR-506   LEU-507  6.3 6.5 -4.3 -12.6 147.1 150.4 -4.9
 LEU-507   GLY-508  5.3 5.4 -9.4 -10.3 139.2 119.3 -8.7
 GLY-508   VAL-509  5.9 6.9 -13.4 15.5 126.8 126.0 -0.1
 VAL-509   SER-510  4.4 7.0 3.5 -16.1 52.0 34.0 -3.8
 SER-510   ILE-511  2.2 4.7 21.3 -0.7 43.3 59.3 8.6
 PHE-504   MET-505  12.5 10.5 -0.2 17.2 143.5 155.7 12.3
 MET-505   THR-506  10.6 10.6 -35.1 36.3 140.0 120.5 4.1
 THR-506   LEU-507  11.7 7.3 -4.3 -12.6 133.7 172.2 -6.2
 LEU-507   GLY-508  9.4 6.7 -9.4 -10.3 140.4 106.3 -3.2
 GLY-508   VAL-509  9.2 4.7 -13.4 15.5 101.9 148.9 -1.8
 VAL-509   SER-510  7.7 5.9 3.5 -16.1 51.7 41.9 -7.8
 SER-510   ILE-511  4.3 5.3 21.3 -0.7 68.2 37.4 7.6
 ILE-511   LEU-512  3.8 6.5 -13.9 16.0 85.7 113.4 -1.9
 PHE-504   MET-505  4.4 5.7 -0.2 17.2 147.5 148.7 9.6
 MET-505   THR-506  4.1 4.1 -35.1 36.3 133.3 140.8 1.8
 THR-506   LEU-507  6.3 6.5 -4.3 -12.6 147.1 150.4 -4.9
 LEU-507   GLY-508  5.3 5.4 -9.4 -10.3 139.2 119.3 -8.7
 GLY-508   VAL-509  5.9 6.9 -13.4 15.5 126.8 126.0 -0.1
 VAL-509   SER-510  4.4 7.0 3.5 -16.1 52.0 34.0 -3.8
 SER-510   ILE-511  2.2 4.7 21.3 -0.7 43.3 59.3 8.6
 PHE-504   MET-505  12.5 10.5 -0.2 17.2 143.5 155.7 12.3
 MET-505   THR-506  10.6 10.6 -35.1 36.3 140.0 120.5 4.1
 THR-506   LEU-507  11.7 7.3 -4.3 -12.6 133.7 172.2 -6.2
 LEU-507   GLY-508  9.4 6.7 -9.4 -10.3 140.4 106.3 -3.2
 GLY-508   VAL-509  9.2 4.7 -13.4 15.5 101.9 148.9 -1.8
 VAL-509   SER-510  7.7 5.9 3.5 -16.1 51.7 41.9 -7.8
 SER-510   ILE-511  4.3 5.3 21.3 -0.7 68.2 37.4 7.6
 ILE-511   LEU-512  3.8 6.5 -13.9 16.0 85.7 113.4 -1.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-645   ALA-646  7.7 7.5 -11.3 2.0 68.8 98.8 -4.0
 ALA-646   LYS-647  10.6 10.4 4.8 15.1 156.9 140.1 -9.8
 LYS-647   GLN-648  9.6 10.5 -23.8 13.7 85.1 29.2 1.0
 GLN-648   THR-649  9.4 10.1 18.9 -1.3 68.2 70.1 9.4
 THR-649   LYS-650  12.6 12.9 1.8 -21.3 66.8 105.2 -6.1
 LYS-650   ILE-651  12.6 12.5 15.7 0.7 12.9 62.1 5.4
 ILE-651   GLU-652  10.9 10.4 -4.4 -0.3 124.2 153.4 5.3
 GLU-652   TYR-653  12.8 12.8 -11.7 5.2 129.8 141.3 -3.3
 TYR-653   GLY-654  11.2 11.7 33.1 -37.3 55.0 41.2 -10.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-676   TRP-677  16.0 12.9 -4.3 0.8 128.0 113.0 -2.9
 TRP-677   ALA-678  19.0 15.6 8.1 -8.7 121.9 126.0 -0.4
 ALA-678   PHE-679  21.1 18.2 6.0 4.5 101.5 141.2 1.0
 PHE-679   MET-680  18.6 16.5 4.2 7.2 40.5 68.4 6.1
 MET-680   SER-681  18.7 17.2 -14.6 -4.9 103.7 95.2 -9.1
 SER-681   SER-682  22.4 20.6 5.5 -4.3 133.3 150.2 -2.1
 SER-682   LYS-683  22.9 21.4 5.0 27.6 102.7 64.6 7.8
 SER-682   LYS-683  22.9 21.4 5.0 27.6 102.7 64.6 7.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-682   LYS-683  22.9 21.4 5.0 27.6 102.7 64.6 7.8
 SER-682   LYS-683  22.9 21.4 5.0 27.6 102.7 64.6 7.8
 LYS-683   PRO-684  21.2 20.7 36.3 21.3 174.0 127.7 178.6
 PRO-684   SER-685  22.1 23.7 -30.4 -17.8 60.8 86.3 15.5
 SER-685   ALA-686  22.2 22.3 45.2 1.3 117.0 112.6 -29.1
 ALA-686   LEU-687  18.5 19.0 -14.4 -8.5 30.6 45.9 13.0
 LEU-687   VAL-688  18.9 19.9 40.1 -7.4 140.5 75.0 3.1
 VAL-688   LYS-689  19.4 21.1 -5.2 30.7 39.6 28.0 -9.4
 LYS-689   ASN-690  19.8 23.5 -49.8 12.5 45.2 54.1 23.8
 ASN-690   ASN-691  17.4 21.9 -2.5 42.8 111.7 114.0 -205.1
 ASN-691   GLU-692  14.2 19.1 0.3 0.9 76.9 25.1 -3.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-701   ASP-702  16.4 16.3 -13.9 -3.3 70.6 111.0 -0.4
 ASP-702   TYR-703  13.4 12.6 5.6 8.4 62.0 35.4 -2.1
 TYR-703   ALA-704  12.4 13.5 -11.3 14.2 118.3 133.2 -0.7
 ALA-704   LEU-705  9.1 10.8 -24.7 5.1 141.4 155.7 -16.8
 LEU-705   LEU-706  8.8 11.9 -8.3 42.1 92.9 127.8 5.4
 LEU-706   MET-707  9.1 9.4 -14.2 75.5 160.8 140.4 -174.3
 MET-707   GLU-708  8.7 10.6 -47.0 9.3 118.0 136.7 198.9
 GLU-708   SER-709  6.9 9.9 22.3 11.2 97.5 103.2 -15.5
 SER-709   THR-710  3.6 9.1 -17.1 3.7 134.5 101.7 0.9
 THR-710   THR-711  1.9 12.3 3.4 -2.4 75.9 120.9 1.6
 THR-711   ILE-712  3.9 14.0 -3.2 3.3 40.4 22.4 1.1
 ILE-712   GLU-713  3.5 12.7 -4.1 8.4 99.0 94.6 0.2
 GLU-713   TYR-714  2.5 14.5 0.2 -10.3 47.9 91.8 2.3
 TYR-714   ILE-715  4.4 17.6 -6.2 -15.2 63.3 23.0 6.1
 ILE-715   THR-716  7.0 17.7 14.0 -1.3 118.4 136.7 -6.4
 THR-716   GLN-717  7.1 16.7 12.3 12.0 57.2 84.4 -9.4
 GLN-717   ARG-718  8.4 19.9 -7.3 5.7 114.3 60.8 2.0
 ARG-718   ASN-719  10.4 21.7 -29.1 12.2 47.2 6.2 -200.1
 ASN-719   CYS-720  12.0 20.1 8.8 -6.6 138.5 103.4 -0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-733   TYR-734  7.9 8.2 31.6 9.8 57.8 60.3 12.5
 GLY-733   TYR-734  7.9 8.2 31.6 9.8 57.8 60.3 12.5
 GLY-727   LEU-728  4.8 4.5 -21.0 -0.8 107.6 128.2 203.4
 LEU-728   ILE-729  7.3 3.0 -13.5 23.3 46.0 87.2 3.5
 ILE-729   ASP-730  9.6 1.2 3.7 -2.2 73.2 26.5 -9.9
 ASP-730   SER-731  12.6 1.1 -0.9 -28.3 151.8 124.3 -18.9
 SER-731   LYS-732  13.9 1.5 41.4 -34.6 51.1 40.8 8.9
 LYS-732   GLY-733  13.2 3.6 74.4 -33.1 30.0 64.2 5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-761   HIS-762  7.4 7.2 -12.7 0.2 154.0 154.0 -7.8
 HIS-762   ILE-763  9.7 9.4 9.9 -4.1 90.5 91.1 0.9
 ILE-763   MET-764  12.1 11.7 0.1 3.7 83.9 82.3 0.9
 MET-764   LYS-765  9.8 9.4 2.5 0.0 25.9 22.5 2.5
 LYS-765   GLU-766  8.3 8.0 2.1 -1.6 54.7 54.3 0.7
 GLU-766   LYS-767  11.8 11.6 0.0 -3.0 105.0 104.0 -3.2
 LYS-767   TRP-768  12.9 12.4 2.2 -8.4 60.5 61.3 -1.3
 TRP-768   TRP-769  10.8 10.4 -3.6 10.5 170.6 166.4 2.5
 TRP-769   ARG-770  10.6 9.8 105.8 -49.9 59.4 70.2 31.5
 LEU-761   HIS-762  10.1 18.7 -12.7 0.2 141.7 156.4 -9.0
 HIS-762   ILE-763  10.5 19.0 9.9 -4.1 107.9 70.8 3.5
 ILE-763   MET-764  11.1 22.7 0.1 3.7 106.3 63.4 2.6
 MET-764   LYS-765  7.6 22.4 2.5 0.0 40.8 35.2 1.5
 LYS-765   GLU-766  6.0 19.7 2.1 -1.6 67.6 42.0 -0.7
 GLU-766   LYS-767  8.4 22.3 0.0 -3.0 129.3 79.2 -4.1
 LYS-767   TRP-768  8.0 24.8 2.2 -8.4 78.6 51.6 0.9
 TRP-768   TRP-769  4.6 23.0 -3.6 10.5 157.8 143.9 1.7
 TRP-769   ARG-770  5.1 21.0 105.8 -49.9 64.9 63.3 49.6
 ARG-770   GLY-771  8.9 23.6 -47.3 138.7 82.3 165.8 39.2
 LEU-761   HIS-762  7.4 7.2 -12.7 0.2 154.0 154.0 -7.8
 HIS-762   ILE-763  9.7 9.4 9.9 -4.1 90.5 91.1 0.9
 ILE-763   MET-764  12.1 11.7 0.1 3.7 83.9 82.3 0.9
 MET-764   LYS-765  9.8 9.4 2.5 0.0 25.9 22.5 2.5
 LYS-765   GLU-766  8.3 8.0 2.1 -1.6 54.7 54.3 0.7
 GLU-766   LYS-767  11.8 11.6 0.0 -3.0 105.0 104.0 -3.2
 LYS-767   TRP-768  12.9 12.4 2.2 -8.4 60.5 61.3 -1.3
 TRP-768   TRP-769  10.8 10.4 -3.6 10.5 170.6 166.4 2.5
 TRP-769   ARG-770  10.6 9.8 105.8 -49.9 59.4 70.2 31.5
 LEU-761   HIS-762  10.1 18.7 -12.7 0.2 141.7 156.4 -9.0
 HIS-762   ILE-763  10.5 19.0 9.9 -4.1 107.9 70.8 3.5
 ILE-763   MET-764  11.1 22.7 0.1 3.7 106.3 63.4 2.6
 MET-764   LYS-765  7.6 22.4 2.5 0.0 40.8 35.2 1.5
 LYS-765   GLU-766  6.0 19.7 2.1 -1.6 67.6 42.0 -0.7
 GLU-766   LYS-767  8.4 22.3 0.0 -3.0 129.3 79.2 -4.1
 LYS-767   TRP-768  8.0 24.8 2.2 -8.4 78.6 51.6 0.9
 TRP-768   TRP-769  4.6 23.0 -3.6 10.5 157.8 143.9 1.7
 TRP-769   ARG-770  5.1 21.0 105.8 -49.9 64.9 63.3 49.6
 ARG-770   GLY-771  8.9 23.6 -47.3 138.7 82.3 165.8 39.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees