Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  6.3 5.8 6.8 5.7 110.7 111.2 -39.5
 LEU-108   GLY-109  2.9 2.0 -12.8 17.2 138.3 145.9 11.5
 GLY-109   ILE-110  1.6 1.2 -38.9 23.7 63.0 71.2 37.5
 ILE-110   SER-111  4.7 4.7 -4.6 -4.0 76.7 78.6 11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  5.5 6.1 -176.1 148.6 85.6 55.2 7.6
 ASP-212   SER-213  2.4 2.5 131.4 -94.5 60.2 54.1 84.0
 SER-213   LYS-214  2.1 2.1 -20.0 6.9 85.4 81.3 27.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  3.1 3.1 5.9 10.3 135.0 134.6 -50.7
 ARG-252   GLY-253  4.3 4.8 -4.9 -61.3 52.9 55.1 152.8
 GLY-253   ASN-254  3.1 4.2 -27.8 -8.3 33.1 76.3 97.0
 ASN-254   GLY-255  5.0 7.0 -22.1 -1.3 93.9 134.7 -90.0
 GLY-255   CYS-256  8.3 8.0 40.3 -1.0 87.7 109.9 -6.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees