Capsular Polysaccharide Synthesis Enzyme Cap8e

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-164   GLY-165  5.9 6.1 -2.0 -18.9 130.6 131.2 -57.0
 GLY-165   ASN-166  5.3 5.7 47.4 -11.2 21.6 25.2 307.8
 ASN-166   VAL-167  4.7 4.2 -4.2 -15.1 89.9 88.6 -133.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-194   MET-195  18.1 16.8 1.0 5.5 75.1 83.2 25.9
 MET-195   THR-196  15.3 14.5 0.0 -7.6 74.0 80.1 135.4
 THR-196   ARG-197  12.1 11.0 3.1 5.3 101.9 102.1 -3.3
 ARG-197   PHE-198  8.6 7.3 5.1 2.0 111.8 123.0 -7.1
 ARG-197   PHE-198  8.6 7.3 5.1 2.0 111.8 123.0 -7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-197   PHE-198  8.6 7.3 5.1 2.0 111.8 123.0 -7.1
 ARG-197   PHE-198  8.6 7.3 5.1 2.0 111.8 123.0 -7.1
 PHE-198   LEU-199  5.2 4.3 7.5 7.0 35.9 42.2 67.9
 LEU-199   MET-200  4.0 4.0 -14.7 1.5 79.3 87.8 56.8
 MET-200   SER-201  1.6 2.2 -6.3 -10.6 25.6 21.6 135.3
 MET-200   SER-201  1.6 2.2 -6.3 -10.6 25.6 21.6 135.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-200   SER-201  1.6 2.2 -6.3 -10.6 25.6 21.6 135.3
 MET-200   SER-201  1.6 2.2 -6.3 -10.6 25.6 21.6 135.3
 SER-201   LEU-202  3.9 4.4 5.8 -1.8 97.7 93.4 -33.3
 LEU-202   GLU-203  5.4 6.1 -0.6 2.8 125.7 125.2 56.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-223   GLN-224  6.2 6.4 -12.2 11.8 84.2 82.9 33.0
 GLN-224   LYS-225  3.8 4.2 -0.6 -3.4 74.9 76.9 85.7
 LYS-225   ALA-226  1.2 1.9 -6.5 -0.9 142.3 140.1 -92.7
 ALA-226   PRO-227  2.6 2.9 -5.2 11.4 85.7 83.3 13.8
 PRO-227   SER-228  6.2 6.1 -2.2 9.5 135.5 134.7 38.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-233   LEU-234  16.0 15.6 -5.1 -6.7 126.3 129.6 -42.3
 LEU-234   ALA-235  12.8 12.6 0.4 -0.2 23.7 22.5 12.4
 ALA-235   THR-236  15.0 14.6 7.0 -4.1 89.8 89.9 34.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-254   HIS-255  19.6 21.0 -46.9 -3.8 126.0 135.5 -286.3
 HIS-255   GLY-256  21.1 23.2 -58.4 61.2 112.0 98.4 -11.6
 GLY-256   GLU-257  19.1 21.0 -26.6 81.0 116.3 94.6 268.8
 GLU-257   LYS-258  16.9 17.3 2.2 24.5 37.6 25.3 124.5
 LYS-258   LYS-259  16.6 14.8 -46.5 -1.8 87.8 107.6 70.1
 LYS-259   ALA-260  16.6 15.1 4.2 -11.6 70.3 64.2 -17.7
 ALA-260   GLU-261  13.4 11.8 28.3 -12.7 87.3 91.6 15.5
 GLU-261   THR-262  10.9 9.2 -19.5 1.9 157.6 162.9 -147.2
 THR-262   LEU-263  10.4 9.8 -17.0 9.4 83.8 90.2 33.1
 LEU-263   LEU-264  7.7 7.6 -5.9 6.0 141.4 143.1 4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-312   HIS-313  7.6 7.4 -1.9 4.4 100.8 95.4 -14.2
 HIS-313   ILE-314  9.5 9.1 -2.1 -4.3 161.4 163.6 -86.4
 ILE-314   LEU-315  11.6 11.2 20.2 -26.6 66.4 71.6 98.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees